Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0318
         (697 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    22   5.5  
U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.       21   7.3  
U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           21   9.6  
DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8 prot...    21   9.6  

>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = -2

Query: 531 REELKHLQNGAG 496
           REE+K L NG G
Sbjct: 613 REEIKRLDNGVG 624


>U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.
          Length = 470

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +3

Query: 420 YRLRLVHHYGSTKVVRRSLRGKY 488
           Y  +L+ H+G+TKV     R  Y
Sbjct: 135 YHHQLLGHFGATKVYNSMKREYY 157


>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +2

Query: 437 TPLRFNKSGPPESPRQIPTPPAP 505
           TPL  + +  PE   +IP  P P
Sbjct: 70  TPLPSDGTTSPEPDPEIPVAPEP 92


>DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8
           protein.
          Length = 496

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 8/26 (30%), Positives = 13/26 (50%)
 Frame = +3

Query: 549 GHALLHCDHLQVHLAHHLIYRDTSLR 626
           G+     DH+  +L  H+IY    L+
Sbjct: 39  GNGRFTVDHIDPYLCTHIIYSFVGLQ 64


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,834
Number of Sequences: 336
Number of extensions: 3734
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18322480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)