Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0318
(697 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0578 + 5180538-5181385,5182480-5182595,5183397-5183605,518... 30 1.5
03_02_0557 + 9450212-9450346,9450553-9450633,9450768-9451114,945... 30 2.0
04_03_0631 - 18190195-18190686,18190866-18191066 29 3.5
09_04_0361 - 16948740-16948860,16948951-16949018,16949424-169495... 29 4.7
02_03_0315 - 17610605-17610855,17611304-17611370,17612876-176129... 29 4.7
11_06_0610 - 25449085-25453284 28 6.2
11_02_0005 - 7264736-7264753,7265086-7265188,7265487-7265539,726... 28 6.2
05_06_0026 - 25024807-25025300,25025432-25025495,25025567-250256... 28 8.1
05_03_0132 - 8786518-8786827,8786897-8787164,8787296-8788005,878... 28 8.1
04_03_0301 + 14094370-14094584,14096694-14096727,14098084-140980... 28 8.1
>05_01_0578 +
5180538-5181385,5182480-5182595,5183397-5183605,
5184024-5184143,5184247-5184375,5184466-5184591,
5185550-5185667,5186471-5186680,5186788-5187100,
5187467-5187560,5187760-5187868,5188322-5188593,
5188684-5188811,5188977-5189211,5189794-5189982,
5190069-5190349,5190431-5190698,5190719-5190961,
5191598-5191680,5192484-5192493
Length = 1366
Score = 30.3 bits (65), Expect = 1.5
Identities = 21/57 (36%), Positives = 26/57 (45%)
Frame = +2
Query: 335 RMKLLKLVTLAKADGNPSWHLFWATKELIPIKVSTPLRFNKSGPPESPRQIPTPPAP 505
R+ L L LA A GNPS F + + + L F+ PP P P PPAP
Sbjct: 15 RLPHLALALLAVASGNPSLGGF--DRGDAEAEAYSILTFHDYTPPPPPSLPPPPPAP 69
>03_02_0557 + 9450212-9450346,9450553-9450633,9450768-9451114,
9451345-9451945,9452206-9452239,9452514-9452577,
9452909-9453325,9453439-9453523,9453773-9453831,
9453931-9454043,9456407-9456509,9456597-9456654,
9456781-9456834,9456922-9457131,9457254-9457312,
9457436-9457495,9457709-9457802,9458366-9458506,
9458562-9458741
Length = 964
Score = 29.9 bits (64), Expect = 2.0
Identities = 16/82 (19%), Positives = 33/82 (40%), Gaps = 2/82 (2%)
Frame = -3
Query: 695 TPPIEHLFVGQWAVAAGYGLTSDAQTGISVNQVMSQVNLQVITVQQCM--AVFGSNFVRN 522
T P++ W+ GY + SD Q ++ N +S + + + C+ F ++
Sbjct: 881 TAPVDPEMAPIWSEKLGYTILSDEQLVLANNSNLSNNSTDIALLMLCLLTEAFYADGTSL 940
Query: 521 SNICRTELAVSVFAAETPADHF 456
++C +L + P F
Sbjct: 941 GDVCEPKLGAEITCLRRPITRF 962
>04_03_0631 - 18190195-18190686,18190866-18191066
Length = 230
Score = 29.1 bits (62), Expect = 3.5
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = -3
Query: 578 QVITVQQCMAVFGSNFVRNSNICRTELAVSVFAAETPADH 459
Q++ ++Q + VFG NF + +C E A+ + A P H
Sbjct: 131 QLLWMKQTLKVFGYNFTKIPLLCDNESAIKI--ANNPVQH 168
>09_04_0361 -
16948740-16948860,16948951-16949018,16949424-16949510,
16949626-16949694,16949786-16949854,16949944-16950765
Length = 411
Score = 28.7 bits (61), Expect = 4.7
Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = +2
Query: 380 NPSWHL-FWATKELIPIKVSTPLRFNKSGPPESPRQIPTPPAP 505
NP+ L F T + +P + L + S PP SP P PPAP
Sbjct: 145 NPASFLPFLQTSKWLPC---SDLATSSSAPPSSPSPSPPPPAP 184
>02_03_0315 -
17610605-17610855,17611304-17611370,17612876-17612941,
17613037-17613158,17613245-17613428,17614262-17614494,
17614580-17614913,17615043-17615186,17615303-17615344
Length = 480
Score = 28.7 bits (61), Expect = 4.7
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +2
Query: 422 PIKVSTPLRFNKSGPPESPRQIPTPPAP 505
PI + P + PP+ +Q P PPAP
Sbjct: 263 PIPATRPAPAARPAPPKPEKQSPAPPAP 290
>11_06_0610 - 25449085-25453284
Length = 1399
Score = 28.3 bits (60), Expect = 6.2
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +2
Query: 422 PIKVSTPLRFNKSGPPESPRQIPTPP 499
P+ VS+P KS PP +P +P PP
Sbjct: 1139 PVPVSSPPPPEKSPPPPAPVILPPPP 1164
>11_02_0005 -
7264736-7264753,7265086-7265188,7265487-7265539,
7265791-7265880,7266093-7266217,7266528-7266753
Length = 204
Score = 28.3 bits (60), Expect = 6.2
Identities = 13/25 (52%), Positives = 14/25 (56%)
Frame = +2
Query: 431 VSTPLRFNKSGPPESPRQIPTPPAP 505
VS P K PP SP +PT PAP
Sbjct: 36 VSAPKPKAKPPPPPSPPPLPTAPAP 60
>05_06_0026 -
25024807-25025300,25025432-25025495,25025567-25025662,
25025719-25025929,25026616-25026690,25026820-25027037
Length = 385
Score = 27.9 bits (59), Expect = 8.1
Identities = 13/31 (41%), Positives = 15/31 (48%)
Frame = +2
Query: 413 ELIPIKVSTPLRFNKSGPPESPRQIPTPPAP 505
E PI V P + PP P Q+P PP P
Sbjct: 2 EATPISVKPPSPV-AAAPPPPPVQVPVPPPP 31
>05_03_0132 -
8786518-8786827,8786897-8787164,8787296-8788005,
8788060-8788346,8788761-8789033
Length = 615
Score = 27.9 bits (59), Expect = 8.1
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = -2
Query: 387 DGFPSAFARVTSFNNFIRQHL 325
DGF SAF SFN I+ HL
Sbjct: 370 DGFASAFQNQLSFNKMIQTHL 390
>04_03_0301 +
14094370-14094584,14096694-14096727,14098084-14098095,
14098400-14098574,14099064-14099299,14099396-14100457
Length = 577
Score = 27.9 bits (59), Expect = 8.1
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +2
Query: 368 KADGNPSWHLFWATKELIPIKVSTPLRFNKSG 463
+A G P W F KE++ ++ PLR NK G
Sbjct: 252 EAYGTPLWRRF---KEMVELRFGPPLRHNKLG 280
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,637,387
Number of Sequences: 37544
Number of extensions: 374284
Number of successful extensions: 1441
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1274
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1431
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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