Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0318
(697 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g15010.2 68416.m01899 RNA recognition motif (RRM)-containing ... 29 2.2
At3g15010.1 68416.m01898 RNA recognition motif (RRM)-containing ... 29 2.2
At5g15870.1 68418.m01857 glycosyl hydrolase family 81 protein si... 29 3.9
At3g19090.1 68416.m02426 RNA-binding protein, putative similar t... 28 5.1
At1g08420.1 68414.m00931 kelch repeat-containing protein / serin... 28 5.1
At1g76130.1 68414.m08841 alpha-amylase, putative / 1,4-alpha-D-g... 28 6.8
At5g02850.1 68418.m00228 hydroxyproline-rich glycoprotein family... 27 9.0
At3g05470.1 68416.m00599 formin homology 2 domain-containing pro... 27 9.0
>At3g15010.2 68416.m01899 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 404
Score = 29.5 bits (63), Expect = 2.2
Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 2/68 (2%)
Frame = -2
Query: 609 GKSGDEPSEPASDHSATVHGRFR*QLREELKHL--QNGAGGVGICRGDSGGPLLLNRNGV 436
GK G +P P + + HG + ++ AGG+ G SGGP + N
Sbjct: 245 GKKGGKPGMPQAQDGGSGHGHVHGEGMGMVRPAGPYGAAGGISAYGGYSGGPPAHHMNST 304
Query: 435 LTLIGISS 412
+ +G+ S
Sbjct: 305 HSSMGVGS 312
>At3g15010.1 68416.m01898 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 404
Score = 29.5 bits (63), Expect = 2.2
Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 2/68 (2%)
Frame = -2
Query: 609 GKSGDEPSEPASDHSATVHGRFR*QLREELKHL--QNGAGGVGICRGDSGGPLLLNRNGV 436
GK G +P P + + HG + ++ AGG+ G SGGP + N
Sbjct: 245 GKKGGKPGMPQAQDGGSGHGHVHGEGMGMVRPAGPYGAAGGISAYGGYSGGPPAHHMNST 304
Query: 435 LTLIGISS 412
+ +G+ S
Sbjct: 305 HSSMGVGS 312
>At5g15870.1 68418.m01857 glycosyl hydrolase family 81 protein
similar to beta-glucan-elicitor receptor GI:1752734 from
[Glycine max]
Length = 745
Score = 28.7 bits (61), Expect = 3.9
Identities = 9/29 (31%), Positives = 17/29 (58%)
Frame = +2
Query: 419 IPIKVSTPLRFNKSGPPESPRQIPTPPAP 505
+ + ++ P + K+ PP P +P PP+P
Sbjct: 9 VKVLITKPFKKPKNRPPSPPPPLPLPPSP 37
>At3g19090.1 68416.m02426 RNA-binding protein, putative similar to
RNA-binding protein homolog GB:AAF00075 GI:6449448 from
[Brassica napus]; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 455
Score = 28.3 bits (60), Expect = 5.1
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = -3
Query: 281 RIHARSKYKETLVSDEAKEKIHS*NTW 201
+IHA +Y T+++D+A EK++ W
Sbjct: 287 KIHALIEYDNTVIADKAVEKLNDERNW 313
>At1g08420.1 68414.m00931 kelch repeat-containing protein /
serine/threonine phosphoesterase family protein contains
Pfam profiles: PF00149 calcineurin-like phosphoesterase,
PF01344 kelch motif
Length = 1018
Score = 28.3 bits (60), Expect = 5.1
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = +2
Query: 422 PIKVSTPLRFNKSGPPESPRQIPTPP 499
P++ TP + N PP +PTPP
Sbjct: 28 PMERETPQQMNDQSPPPEGGSVPTPP 53
>At1g76130.1 68414.m08841 alpha-amylase, putative /
1,4-alpha-D-glucan glucanohydrolase, putative strong
similarity to alpha-amylase GI:7532799 from [Malus x
domestica];contains Pfam profile PF00128: Alpha amylase,
catalytic domain
Length = 413
Score = 27.9 bits (59), Expect = 6.8
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +3
Query: 444 YGSTKVVRRSLRGKYRHRQLRSADV*VPHEVATENGH 554
YGS +++ LR +++ AD+ + H V T GH
Sbjct: 86 YGSEHLLKSLLRKMKQYKVRAMADIVINHRVGTTRGH 122
>At5g02850.1 68418.m00228 hydroxyproline-rich glycoprotein family
protein
Length = 426
Score = 27.5 bits (58), Expect = 9.0
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = +2
Query: 404 ATKELIPIKVSTPLRFNKSGPPESPRQIPTPP 499
A L+P ++ P + P E PR +P PP
Sbjct: 325 AIHNLLPPNIAVPSGWKPGMPVELPRDLPLPP 356
>At3g05470.1 68416.m00599 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02181
Length = 884
Score = 27.5 bits (58), Expect = 9.0
Identities = 12/28 (42%), Positives = 13/28 (46%)
Frame = +2
Query: 422 PIKVSTPLRFNKSGPPESPRQIPTPPAP 505
P +P F GP ESP P PP P
Sbjct: 96 PWPAPSPSPFPNGGPIESPAYPPAPPRP 123
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,247,027
Number of Sequences: 28952
Number of extensions: 295671
Number of successful extensions: 909
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 814
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 907
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1487069504
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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