Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0317
         (660 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          25   0.48 
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      25   0.48 
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    23   3.4  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        23   3.4  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        23   3.4  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        23   3.4  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    23   3.4  
AB264333-1|BAF44088.1|   36|Apis mellifera ecdysone-induced prot...    22   6.0  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               21   7.9  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    21   7.9  

>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 25.4 bits (53), Expect = 0.48
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +2

Query: 455 MERLSVDYGKKSKLEFASPRASGFH 529
           +ER+S D GK ++ ++  P  SGF+
Sbjct: 274 LERMSNDLGKTAEFDWNKPINSGFY 298


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 25.4 bits (53), Expect = 0.48
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +2

Query: 455 MERLSVDYGKKSKLEFASPRASGFH 529
           +ER+S D GK ++ ++  P  SGF+
Sbjct: 274 LERMSNDLGKTAEFDWNKPINSGFY 298


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 8/10 (80%), Positives = 9/10 (90%)
 Frame = -3

Query: 61  PSRHYRSGLR 32
           P RHYRSGL+
Sbjct: 139 PLRHYRSGLK 148


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = -3

Query: 124 RWSCLWASGHQAGCRAPGSKAPSRHYR 44
           RW C W+ G    C+A    A SR  R
Sbjct: 387 RW-CTWSEGDLEKCKALTRAAYSRDVR 412


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = -3

Query: 124 RWSCLWASGHQAGCRAPGSKAPSRHYR 44
           RW C W+ G    C+A    A SR  R
Sbjct: 387 RW-CTWSEGDLEKCKALTRAAYSRDVR 412


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = -3

Query: 124 RWSCLWASGHQAGCRAPGSKAPSRHYR 44
           RW C W+ G    C+A    A SR  R
Sbjct: 387 RW-CTWSEGDLEKCKALTRAAYSRDVR 412


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 15/43 (34%), Positives = 19/43 (44%), Gaps = 3/43 (6%)
 Frame = +1

Query: 253 CSSRTTYYW*GRCGQQLCPW--SLH-HWKGNRRFGFGQNPQAR 372
           CS  + +Y  G+   QLCP   S H    G  R G  + P  R
Sbjct: 365 CSQTSVHYSNGQTHSQLCPTPRSTHLKVSGINRVGSTRRPSRR 407


>AB264333-1|BAF44088.1|   36|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 36

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +2

Query: 95  MARCPQTRPSGVETILSTLSSARPE 169
           +A+ P      + T+ ST+SSA+PE
Sbjct: 7   VAQLPHHLSPNMPTMDSTVSSAKPE 31


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 9/33 (27%), Positives = 13/33 (39%)
 Frame = +3

Query: 108 HRQDHRGWRRFFQHFLQRDRSWQARTPCCLVDL 206
           H  DH  W  +        + W  R P  L++L
Sbjct: 466 HPYDHLVWNSWMPSIRGAIQQWTCRQPEPLIEL 498


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +3

Query: 357 ESASSLTSVPVCKDS*SSTPSVEVPALGSLPY*WS 461
           +S SS   V   ++S SS+PS+++   G L   WS
Sbjct: 357 QSQSSPKFVARREESNSSSPSLDLGKEGGLEAQWS 391


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 187,285
Number of Sequences: 438
Number of extensions: 4354
Number of successful extensions: 11
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19855845
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)