Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0316
         (441 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF260822-1|AAG02020.1|  138|Tribolium castaneum alpha-esterase l...    25   0.32 
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    21   3.9  
AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    21   6.9  
AM292381-1|CAL23193.2|  364|Tribolium castaneum gustatory recept...    21   6.9  
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    21   6.9  

>AF260822-1|AAG02020.1|  138|Tribolium castaneum alpha-esterase like
           protein E3 protein.
          Length = 138

 Score = 25.0 bits (52), Expect = 0.32
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -1

Query: 351 NGYLMPVFTRNIPDPCFTSL 292
           N  ++ V+TRNIPD   TSL
Sbjct: 53  NCLVLNVYTRNIPDGIHTSL 72


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 21.4 bits (43), Expect = 3.9
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = -2

Query: 281 FQLEILGNYCGYLRFCAALISVMFAMRDCCSKNFIS 174
           F + +L   C Y  FCA +I  M  +  CC+  F +
Sbjct: 156 FTVHLLFLLCIYHFFCAFIIFTMHLL-FCCAFIFFN 190



 Score = 20.6 bits (41), Expect = 6.9
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = +1

Query: 358 VMPTKLKTKFSVMTNKISFYIN 423
           + PT     FS+   K +FY+N
Sbjct: 307 IFPTHFYCAFSLYPLKSTFYLN 328


>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 20.6 bits (41), Expect = 6.9
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = +2

Query: 197 NHAWQTLRKSVQHRSGDNRNNCRGF 271
           N+A  T   SVQ  S DN N+   F
Sbjct: 459 NNAIMTPPASVQTESSDNYNSFHQF 483


>AM292381-1|CAL23193.2|  364|Tribolium castaneum gustatory receptor
           candidate 60 protein.
          Length = 364

 Score = 20.6 bits (41), Expect = 6.9
 Identities = 10/51 (19%), Positives = 25/51 (49%)
 Frame = -2

Query: 404 LLVITENFVLSFVGITNGMGTSCRYLLGTFQTHALQVWQYPFQLEILGNYC 252
           ++++ + +V  ++ +TN     C  L+G  +   + +    F+L  L + C
Sbjct: 226 VVLLGDLYVTLYIILTNNQAKYCTTLIGLIKNCVIVI----FELYYLSHVC 272


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 20.6 bits (41), Expect = 6.9
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = +2

Query: 197 NHAWQTLRKSVQHRSGDNRNNCRGF 271
           N+A  T   SVQ  S DN N+   F
Sbjct: 407 NNAIMTPPASVQTESSDNYNSFHQF 431


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 109,978
Number of Sequences: 336
Number of extensions: 2377
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used:  9880622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)