Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0316
(441 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 26 2.2
SPAC1F7.12 |yak3|yakC, SPAC21E11.01|aldose reductase YakC|Schizo... 26 3.0
SPBC3B9.04 |||mitochondrial methyltransferase |Schizosaccharomyc... 25 3.9
SPCC737.04 |||S. pombe specific UPF0300 family protein 6|Schizos... 25 3.9
SPAC959.03c |||U3 snoRNP-associated protein Utp7|Schizosaccharom... 25 3.9
SPAC24C9.15c |spn5|mde9, meu28|septin Spn5|Schizosaccharomyces p... 25 3.9
SPBC16H5.02 |pfk1||6-phosphofructokinase |Schizosaccharomyces po... 25 5.2
SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1... 25 5.2
SPACUNK4.06c |rpb7|SPAPYUK71.02|DNA-directed RNA polymerase comp... 25 5.2
SPAC8C9.03 |cgs1||cAMP-dependent protein kinase regulatory subun... 25 6.8
SPAC12B10.03 |||WD repeat protein, human WDR20 family|Schizosacc... 25 6.8
SPAC1093.04c |||tRNA nucleotidyltransferase |Schizosaccharomyces... 25 6.8
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 26.2 bits (55), Expect = 2.2
Identities = 11/34 (32%), Positives = 21/34 (61%)
Frame = -2
Query: 116 KEVNVSNSNAQAVFVDTRSVGVNNFNVLSIVCSQ 15
+E ++S ++ ++FV S VN F+V S+ S+
Sbjct: 176 REKSISKASEYSIFVGDLSPNVNEFDVYSLFASR 209
>SPAC1F7.12 |yak3|yakC, SPAC21E11.01|aldose reductase
YakC|Schizosaccharomyces pombe|chr 1|||Manual
Length = 340
Score = 25.8 bits (54), Expect = 3.0
Identities = 12/48 (25%), Positives = 22/48 (45%)
Frame = -2
Query: 377 LSFVGITNGMGTSCRYLLGTFQTHALQVWQYPFQLEILGNYCGYLRFC 234
+ ++G++ + R + A+QV PF LEI G ++ C
Sbjct: 150 IRYIGLSECSANTIRRAAAVYPVSAVQVEYSPFSLEIERPEIGVMKAC 197
>SPBC3B9.04 |||mitochondrial methyltransferase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 248
Score = 25.4 bits (53), Expect = 3.9
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = +2
Query: 209 QTLRKSVQHRSGDNRNNCRGFLVEMGTAKLVKHGSGMFR 325
QT Q ++ + NN R L G L++HG G ++
Sbjct: 157 QTFCICSQEKAVEQLNNYRSLLRSDGRILLIEHGKGKYK 195
>SPCC737.04 |||S. pombe specific UPF0300 family protein
6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 421
Score = 25.4 bits (53), Expect = 3.9
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -1
Query: 357 KWNGYLMPVFTRNIPDPCFTSL 292
K +GY+ P+F +P CF SL
Sbjct: 374 KKSGYMQPLFDLTMPLGCFDSL 395
>SPAC959.03c |||U3 snoRNP-associated protein
Utp7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 520
Score = 25.4 bits (53), Expect = 3.9
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = -2
Query: 371 FVGITNGMGTSCRYLLGTFQTHALQVWQYPFQLEILGNYCGYLRF 237
+V + + MGT L + +AL Y L +GN GYL++
Sbjct: 164 YVYVYDNMGTEIHCLKRHIEVNALDFLPYHLLLTSIGN-AGYLKY 207
>SPAC24C9.15c |spn5|mde9, meu28|septin Spn5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 464
Score = 25.4 bits (53), Expect = 3.9
Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Frame = -2
Query: 134 DKTAVDKEVNVSNSNAQAV--FVDTRSVGVNNFN 39
DK K+ V NSN +++ F ++G+N+FN
Sbjct: 72 DKKTEFKQDEVPNSNGKSIPTFHPCNNIGINDFN 105
>SPBC16H5.02 |pfk1||6-phosphofructokinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 942
Score = 25.0 bits (52), Expect = 5.2
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = -2
Query: 281 FQLEILGNYCGYLRFCAAL 225
F +E++G +CG+L AAL
Sbjct: 382 FIVEVMGRHCGWLAVLAAL 400
>SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 743
Score = 25.0 bits (52), Expect = 5.2
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = -3
Query: 100 PIAMPKPFLLTPDPSV*IT 44
P AMP P + +P PS+ +T
Sbjct: 555 PTAMPHPNITSPSPSISVT 573
>SPACUNK4.06c |rpb7|SPAPYUK71.02|DNA-directed RNA polymerase complex
II subunit Rpb7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 172
Score = 25.0 bits (52), Expect = 5.2
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +3
Query: 42 EVIHTDGSGVNKNGLGIAIGHIDFFVNGRLVQP 140
EV+ + VNK G IG ++ FV+ LV P
Sbjct: 86 EVVDAIVTTVNKMGFFANIGPLNVFVSSHLVPP 118
>SPAC8C9.03 |cgs1||cAMP-dependent protein kinase regulatory subunit
Cgs1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 412
Score = 24.6 bits (51), Expect = 6.8
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +2
Query: 224 SVQHRSGDNRNNCRGFLVEMGTAKLVKHGSGM 319
S+ R GD N +L+E G A++VK+G G+
Sbjct: 303 SIVIRQGDIGNQF--YLIEDGEAEVVKNGKGV 332
>SPAC12B10.03 |||WD repeat protein, human WDR20
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 543
Score = 24.6 bits (51), Expect = 6.8
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = +1
Query: 328 KYRHEVPIPFVMPTK 372
KYRHE P+ V+P K
Sbjct: 271 KYRHEQPLHIVVPEK 285
>SPAC1093.04c |||tRNA nucleotidyltransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 500
Score = 24.6 bits (51), Expect = 6.8
Identities = 9/42 (21%), Positives = 24/42 (57%)
Frame = +1
Query: 313 WNVPSKYRHEVPIPFVMPTKLKTKFSVMTNKISFYINYYLLL 438
W++ K + ++ P ++ LK +M+ +F+++Y L++
Sbjct: 324 WSILEKSKIKILPPILIRDSLKYSKPIMSQVENFFVHYPLIM 365
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,852,387
Number of Sequences: 5004
Number of extensions: 37048
Number of successful extensions: 104
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 160149590
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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