Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0316
(441 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_1018 + 21753634-21753640,21754282-21754315,21754413-217544... 29 1.3
05_05_0359 + 24393254-24393260,24393952-24394163,24394243-243942... 28 2.9
07_03_0685 - 20679883-20679927,20680034-20680087,20680179-206803... 27 5.1
08_02_0210 + 14324539-14324609,14324735-14325740,14325838-143273... 27 6.7
03_02_0918 + 12381662-12383118,12383249-12384707 27 6.7
12_02_0812 + 23383704-23384143,23384902-23385247 27 8.8
09_04_0528 - 18348071-18348136,18348477-18351209 27 8.8
06_03_0415 + 20558333-20558635,20558894-20558917 27 8.8
06_01_0052 + 453923-454179,454265-454494,454952-455062,455200-45... 27 8.8
03_03_0196 + 15331604-15331646,15332141-15332260,15334106-153342... 27 8.8
02_05_0138 - 26190110-26191038,26191123-26191221,26191388-261915... 27 8.8
02_03_0321 - 17683766-17683834,17685085-17685150,17685568-176856... 27 8.8
>04_03_1018 +
21753634-21753640,21754282-21754315,21754413-21754432,
21754485-21755782
Length = 452
Score = 29.5 bits (63), Expect = 1.3
Identities = 12/46 (26%), Positives = 22/46 (47%)
Frame = +3
Query: 60 GSGVNKNGLGIAIGHIDFFVNGRLVQPGCTNNLCSHNRAYEVFAAT 197
G ++ +G +GH+ + +G+ GC + S A E AA+
Sbjct: 320 GGAIHHGAVGALLGHLSWAASGKCASGGCAGAVPSALAAVEALAAS 365
>05_05_0359 +
24393254-24393260,24393952-24394163,24394243-24394296,
24394400-24394444
Length = 105
Score = 28.3 bits (60), Expect = 2.9
Identities = 16/38 (42%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Frame = +2
Query: 185 FCCNNHAWQTLRKS-VQHRSGDNRNNCRGFLVEMGTAK 295
FCCN Q V GD R N FLV+ G AK
Sbjct: 59 FCCNGTVVQDPELGQVIQLQGDQRKNVATFLVQAGIAK 96
>07_03_0685 -
20679883-20679927,20680034-20680087,20680179-20680390,
20680476-20680550,20683094-20683168,20686196-20686264,
20686349-20686502,20686577-20686654,20689102-20689194,
20689491-20689640,20690134-20690268,20691009-20691098,
20691412-20691453,20691796-20692053,20692131-20692207,
20693126-20693186,20693687-20693905,20694936-20695208,
20695314-20695505,20695841-20696011
Length = 840
Score = 27.5 bits (58), Expect = 5.1
Identities = 15/38 (39%), Positives = 16/38 (42%), Gaps = 1/38 (2%)
Frame = +2
Query: 185 FCCNNHAWQTLRKS-VQHRSGDNRNNCRGFLVEMGTAK 295
FCCN Q V GD R N FLV+ G K
Sbjct: 794 FCCNGTVVQDPELGQVIQLQGDQRKNVSNFLVQAGIVK 831
>08_02_0210 +
14324539-14324609,14324735-14325740,14325838-14327390,
14327473-14327601,14328345-14328510
Length = 974
Score = 27.1 bits (57), Expect = 6.7
Identities = 13/23 (56%), Positives = 15/23 (65%)
Frame = -1
Query: 309 PCFTSLAVPISTRNPRQLLRLSP 241
PC +LA+ ISTRNPR L P
Sbjct: 761 PCPHALALIISTRNPRMADYLDP 783
>03_02_0918 + 12381662-12383118,12383249-12384707
Length = 971
Score = 27.1 bits (57), Expect = 6.7
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = -3
Query: 109 SMCPIAMPKPFLLTPDPS 56
S CP +PKP +L PD S
Sbjct: 572 SSCPGVLPKPIVLNPDSS 589
>12_02_0812 + 23383704-23384143,23384902-23385247
Length = 261
Score = 26.6 bits (56), Expect = 8.8
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Frame = -1
Query: 396 HHRK--LRFKFCRHHKWNGYLMPVFTRNIPDPCFTSLAVPISTRNP 265
HHRK RF+ + NGYL V T I DP + ++ R+P
Sbjct: 21 HHRKGPARFRSLDFGERNGYLKGVVTDIIHDPGRGAPLAKVTFRHP 66
>09_04_0528 - 18348071-18348136,18348477-18351209
Length = 932
Score = 26.6 bits (56), Expect = 8.8
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +2
Query: 323 RVNTGMRYPFHL*CLQNLKRSFL 391
RV TG + FH C NLK++ L
Sbjct: 826 RVYTGQQLSFHANCFPNLKKALL 848
>06_03_0415 + 20558333-20558635,20558894-20558917
Length = 108
Score = 26.6 bits (56), Expect = 8.8
Identities = 8/18 (44%), Positives = 13/18 (72%)
Frame = +2
Query: 47 YSHRRIWCQQKRLGHCYW 100
+ HRR W ++K L +C+W
Sbjct: 91 HHHRRRWKRKKMLCYCFW 108
>06_01_0052 +
453923-454179,454265-454494,454952-455062,455200-455352,
455440-455974,456334-456733
Length = 561
Score = 26.6 bits (56), Expect = 8.8
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = -1
Query: 309 PCFTSLAVPISTRNPRQLLRLSP 241
PC T+L V ++T PR L +L+P
Sbjct: 298 PCVTALVVALATAFPRLLGKLAP 320
>03_03_0196 +
15331604-15331646,15332141-15332260,15334106-15334221,
15334661-15334749,15334885-15334927,15335567-15335741,
15335840-15335971,15336046-15336383,15336791-15337129,
15337293-15337975,15338228-15338807,15339356-15339679,
15340149-15340262
Length = 1031
Score = 26.6 bits (56), Expect = 8.8
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +3
Query: 24 NDAQYVEVIHTDGSGVNKNGLGIAI 98
+DAQY+E H+ +G+N+ L I +
Sbjct: 538 SDAQYMETSHSQANGINEMHLQIRL 562
>02_05_0138 -
26190110-26191038,26191123-26191221,26191388-26191518,
26191622-26191756,26191836-26191933,26192747-26192919,
26193027-26193411
Length = 649
Score = 26.6 bits (56), Expect = 8.8
Identities = 13/44 (29%), Positives = 21/44 (47%)
Frame = -2
Query: 347 GTSCRYLLGTFQTHALQVWQYPFQLEILGNYCGYLRFCAALISV 216
G SC +L F T L+ W+ F + Y G C+ L+++
Sbjct: 245 GESCGFL--QFPTFGLKAWKQTFYFDFSLTYVGAGMICSHLVNL 286
>02_03_0321 -
17683766-17683834,17685085-17685150,17685568-17685633,
17685827-17685897,17688035-17688053,17688405-17688687,
17688775-17688945,17689060-17689431,17689629-17689669,
17690112-17690365,17691185-17691263,17691390-17691950
Length = 683
Score = 26.6 bits (56), Expect = 8.8
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = +2
Query: 224 SVQHRSGDNRNNCRGFLVEMGT 289
SVQ + D C GFL+++G+
Sbjct: 289 SVQEKRNDTPEKCEGFLIKLGS 310
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,149,861
Number of Sequences: 37544
Number of extensions: 253889
Number of successful extensions: 587
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 576
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 587
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 835800280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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