Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0316
         (441 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF098505-3|AAL27269.2|  578|Caenorhabditis elegans Hypothetical ...    31   0.49 
AF098505-2|AAC67416.2|  814|Caenorhabditis elegans Hypothetical ...    31   0.49 
Z99276-1|CAB16481.2| 1014|Caenorhabditis elegans Hypothetical pr...    27   4.6  
Z73428-6|CAA97810.2| 1014|Caenorhabditis elegans Hypothetical pr...    27   4.6  

>AF098505-3|AAL27269.2|  578|Caenorhabditis elegans Hypothetical
           protein Y71H10A.1b protein.
          Length = 578

 Score = 30.7 bits (66), Expect = 0.49
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = -2

Query: 299 QVWQYPFQLEILGNYCGYLRFCAALIS 219
           Q  Q  F +E++G +CGYL   AAL S
Sbjct: 24  QSHQRAFVIEVMGRHCGYLALVAALAS 50



 Score = 26.6 bits (56), Expect = 8.0
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -2

Query: 281 FQLEILGNYCGYLRFCAALIS 219
           F +E +G YCGYL   +AL S
Sbjct: 400 FIVETMGGYCGYLATLSALSS 420


>AF098505-2|AAC67416.2|  814|Caenorhabditis elegans Hypothetical
           protein Y71H10A.1a protein.
          Length = 814

 Score = 30.7 bits (66), Expect = 0.49
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = -2

Query: 299 QVWQYPFQLEILGNYCGYLRFCAALIS 219
           Q  Q  F +E++G +CGYL   AAL S
Sbjct: 227 QSHQRAFVIEVMGRHCGYLALVAALAS 253



 Score = 26.6 bits (56), Expect = 8.0
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -2

Query: 281 FQLEILGNYCGYLRFCAALIS 219
           F +E +G YCGYL   +AL S
Sbjct: 603 FIVETMGGYCGYLATLSALSS 623


>Z99276-1|CAB16481.2| 1014|Caenorhabditis elegans Hypothetical
           protein M142.6 protein.
          Length = 1014

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +1

Query: 322 PSKYRHEVPIPFVMPTKLKTKFSVMTNKISFYINYY 429
           P +  H + I  +   K K+ F  +  KISF++N+Y
Sbjct: 636 PGQPPHTIWIQSIGVFKRKSNFLKIVRKISFFLNFY 671


>Z73428-6|CAA97810.2| 1014|Caenorhabditis elegans Hypothetical
           protein M142.6 protein.
          Length = 1014

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +1

Query: 322 PSKYRHEVPIPFVMPTKLKTKFSVMTNKISFYINYY 429
           P +  H + I  +   K K+ F  +  KISF++N+Y
Sbjct: 636 PGQPPHTIWIQSIGVFKRKSNFLKIVRKISFFLNFY 671


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,521,855
Number of Sequences: 27780
Number of extensions: 220893
Number of successful extensions: 541
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 508
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 541
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 756625558
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)