Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0316
         (441 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex det...    24   0.85 
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    22   3.4  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   4.5  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   4.5  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    21   6.0  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   6.0  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            21   6.0  

>DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex
           determiner protein.
          Length = 186

 Score = 23.8 bits (49), Expect = 0.85
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = +1

Query: 280 NGYCQTCKAWVWNVPSKYRHEVPIPFVMP 366
           N Y   CK   +N+   Y  ++P+P  +P
Sbjct: 103 NNYNNNCKKLYYNI--NYIEQIPVPVPVP 129


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 21.8 bits (44), Expect = 3.4
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +1

Query: 355 FVMPTKLKTKFSVMTNKISFYINY 426
           FV  T L +   VM + +SF+IN+
Sbjct: 244 FVFQTYLPSILIVMLSWVSFWINH 267


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -2

Query: 383 FVLSFVGITNGMGTSCRY 330
           F+LS VG+  G+G   R+
Sbjct: 28  FILSVVGLAIGLGNLWRF 45


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -2

Query: 383 FVLSFVGITNGMGTSCRY 330
           F+LS VG+  G+G   R+
Sbjct: 81  FILSVVGLAIGLGNLWRF 98


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 21.0 bits (42), Expect = 6.0
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = +1

Query: 280 NGYCQTCKAWVWNVPSKYRHEVPIP 354
           N Y   CK   +N+ +  +  VP+P
Sbjct: 345 NNYNNNCKKLYYNIINIEQIPVPVP 369


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.0 bits (42), Expect = 6.0
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +3

Query: 189 AATITHGKHYGNQCSTEAEIT 251
           A+   + K+Y   CSTE  +T
Sbjct: 441 ASVTPYNKNYTKFCSTEKRLT 461


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 21.0 bits (42), Expect = 6.0
 Identities = 6/16 (37%), Positives = 11/16 (68%)
 Frame = +3

Query: 120 NGRLVQPGCTNNLCSH 167
           NG ++ P   +N+CS+
Sbjct: 361 NGNILSPSIHDNICSN 376


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 129,632
Number of Sequences: 438
Number of extensions: 3147
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11450997
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)