Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0316
(441 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g25540.1 68417.m03682 DNA mismatch repair protein MSH3 (MSH3)... 29 1.4
At5g54940.2 68418.m06843 eukaryotic translation initiation facto... 29 1.8
At5g54940.1 68418.m06842 eukaryotic translation initiation facto... 29 1.8
At1g49590.1 68414.m05560 formin-binding protein-related similar ... 28 3.2
At1g44446.3 68414.m05115 chlorophyll a oxygenase (CAO) / chlorop... 28 3.2
At1g44446.2 68414.m05114 chlorophyll a oxygenase (CAO) / chlorop... 28 3.2
At1g44446.1 68414.m05113 chlorophyll a oxygenase (CAO) / chlorop... 28 3.2
At2g36910.1 68415.m04527 multidrug resistance P-glycoprotein (PG... 27 4.2
At1g48370.1 68414.m05403 oligopeptide transporter OPT family pro... 27 4.2
At1g05690.1 68414.m00590 TAZ zinc finger family protein / BTB/PO... 27 4.2
At5g54760.1 68418.m06820 eukaryotic translation initiation facto... 27 5.6
At4g27130.1 68417.m03899 eukaryotic translation initiation facto... 27 5.6
At3g51190.1 68416.m05604 60S ribosomal protein L8 (RPL8B) riboso... 27 5.6
At3g17650.1 68416.m02254 oligopeptide transporter OPT family pro... 27 5.6
At2g43220.1 68415.m05372 DC1 domain-containing protein contains ... 27 5.6
At1g55700.1 68414.m06378 DC1 domain-containing protein contains ... 27 5.6
At1g54290.1 68414.m06189 eukaryotic translation initiation facto... 27 5.6
At4g14860.1 68417.m02283 ovate family protein 58% similar to ova... 26 9.8
>At4g25540.1 68417.m03682 DNA mismatch repair protein MSH3 (MSH3)
identical to SP|O65607 DNA mismatch repair protein MSH3
(AtMsh3) {Arabidopsis thaliana}
Length = 1081
Score = 29.1 bits (62), Expect = 1.4
Identities = 21/81 (25%), Positives = 32/81 (39%), Gaps = 4/81 (4%)
Frame = +3
Query: 9 LRLGTNDAQYVEVIHTDGSGVNKNGLGIAIGHIDFFVNGRLVQPGCTNNLCSHN----RA 176
+ L N Q +EV+ + G L + H RL++ T+ LC N R
Sbjct: 420 MTLSANTLQQLEVVKNNSDGSESGSLFHNMNHTLTVYGSRLLRHWVTHPLCDRNLISARL 479
Query: 177 YEVFAATITHGKHYGNQCSTE 239
V + G H +Q S+E
Sbjct: 480 DAVSEISACMGSHSSSQLSSE 500
>At5g54940.2 68418.m06843 eukaryotic translation initiation factor
SUI1, putative similar to SP|P32911 Protein translation
factor SUI1 {Saccharomyces cerevisiae}; contains Pfam
profile PF01253: Translation initiation factor SUI1
Length = 112
Score = 28.7 bits (61), Expect = 1.8
Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Frame = +2
Query: 185 FCCNNHAWQT--LRKSVQHRSGDNRNNCRGFLVEMGTAK 295
FCCN + Q L K +Q + GD R FLV+ G AK
Sbjct: 66 FCCNGNVVQDKELGKIIQLQ-GDQRKKVSQFLVQTGIAK 103
>At5g54940.1 68418.m06842 eukaryotic translation initiation factor
SUI1, putative similar to SP|P32911 Protein translation
factor SUI1 {Saccharomyces cerevisiae}; contains Pfam
profile PF01253: Translation initiation factor SUI1
Length = 112
Score = 28.7 bits (61), Expect = 1.8
Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Frame = +2
Query: 185 FCCNNHAWQT--LRKSVQHRSGDNRNNCRGFLVEMGTAK 295
FCCN + Q L K +Q + GD R FLV+ G AK
Sbjct: 66 FCCNGNVVQDKELGKIIQLQ-GDQRKKVSQFLVQTGIAK 103
>At1g49590.1 68414.m05560 formin-binding protein-related similar to
formin binding protein 21 (GI:3550080) [Homo sapiens];
similar to formin binding protein 21 (GI:3550077) [Mus
musculus]; similar to Dinap1-interacting protein 1
(GI:8745458) [Crypthecodinium cohnii]
Length = 242
Score = 27.9 bits (59), Expect = 3.2
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = +1
Query: 268 ISS*NGYCQTCKAWVWNVPSKYRH 339
+S N +C+ CK W+ N P+ R+
Sbjct: 6 VSQGNKWCEFCKIWIQNNPTSIRN 29
>At1g44446.3 68414.m05115 chlorophyll a oxygenase (CAO) /
chlorophyll b synthase identical to chlorophyll a
oxygenase GI:5853117 from [Arabidopsis thaliana];
contains Pfam PF00355 Rieske [2Fe-2S] domain
Length = 433
Score = 27.9 bits (59), Expect = 3.2
Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
Frame = +3
Query: 135 QPGCTNNLCSHNRAYEVFAATITHGK----HYGNQCSTEAE 245
+PGC N C+H RA + T+ G+ ++G + ST+ E
Sbjct: 254 KPGCVRNTCAH-RACPLDLGTVNEGRIQCPYHGWEYSTDGE 293
>At1g44446.2 68414.m05114 chlorophyll a oxygenase (CAO) /
chlorophyll b synthase identical to chlorophyll a
oxygenase GI:5853117 from [Arabidopsis thaliana];
contains Pfam PF00355 Rieske [2Fe-2S] domain
Length = 511
Score = 27.9 bits (59), Expect = 3.2
Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
Frame = +3
Query: 135 QPGCTNNLCSHNRAYEVFAATITHGK----HYGNQCSTEAE 245
+PGC N C+H RA + T+ G+ ++G + ST+ E
Sbjct: 254 KPGCVRNTCAH-RACPLDLGTVNEGRIQCPYHGWEYSTDGE 293
>At1g44446.1 68414.m05113 chlorophyll a oxygenase (CAO) /
chlorophyll b synthase identical to chlorophyll a
oxygenase GI:5853117 from [Arabidopsis thaliana];
contains Pfam PF00355 Rieske [2Fe-2S] domain
Length = 536
Score = 27.9 bits (59), Expect = 3.2
Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
Frame = +3
Query: 135 QPGCTNNLCSHNRAYEVFAATITHGK----HYGNQCSTEAE 245
+PGC N C+H RA + T+ G+ ++G + ST+ E
Sbjct: 254 KPGCVRNTCAH-RACPLDLGTVNEGRIQCPYHGWEYSTDGE 293
>At2g36910.1 68415.m04527 multidrug resistance P-glycoprotein (PGP1)
identical to P-glycoprotein GI:3849833 from [Arabidopsis
thaliana]; homologous to mammalian mdr gene,contains
ATP-binding cassette; related to multi drug resistance
proteins
Length = 1286
Score = 27.5 bits (58), Expect = 4.2
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +3
Query: 183 VFAATITHGKHYGNQCSTEAEI 248
+F TI YG++C+TEAEI
Sbjct: 1111 LFGTTIYENIAYGHECATEAEI 1132
>At1g48370.1 68414.m05403 oligopeptide transporter OPT family
protein similar to iron-phytosiderophore transporter
protein yellow stripe 1 [Zea mays] GI:10770865; contains
Pfam profile PF03169: OPT oligopeptide transporter
protein
Length = 724
Score = 27.5 bits (58), Expect = 4.2
Identities = 12/44 (27%), Positives = 21/44 (47%)
Frame = -2
Query: 347 GTSCRYLLGTFQTHALQVWQYPFQLEILGNYCGYLRFCAALISV 216
G +C + +F T L+ +QY F + Y G C +I++
Sbjct: 266 GENCGF--NSFPTFGLRAYQYKFYFDFSATYVGVGMICPYIINI 307
>At1g05690.1 68414.m00590 TAZ zinc finger family protein / BTB/POZ
domain-containing protein contains Pfam PF00651 :
BTB/POZ domain; contains Pfam PF02135 : TAZ zinc finger;
similar to p300/CBP acetyltransferase-related protein
(GI:12597461) [Arabidopsis thaliana]; similar to
Speckle-type POZ protein (SP:O43791) [Homo sapiens]
Length = 364
Score = 27.5 bits (58), Expect = 4.2
Identities = 15/33 (45%), Positives = 17/33 (51%), Gaps = 4/33 (12%)
Frame = -1
Query: 327 TRNIPDP----CFTSLAVPISTRNPRQLLRLSP 241
T+NIP P C T STR P L+RL P
Sbjct: 5 TKNIPKPPPLPCITYQRFQSSTRKPSSLMRLVP 37
>At5g54760.1 68418.m06820 eukaryotic translation initiation factor
SUI1, putative similar to SP|P32911 Protein translation
factor SUI1 {Saccharomyces cerevisiae}; contains Pfam
profile PF01253: Translation initiation factor SUI1
Length = 113
Score = 27.1 bits (57), Expect = 5.6
Identities = 15/38 (39%), Positives = 16/38 (42%), Gaps = 1/38 (2%)
Frame = +2
Query: 185 FCCNNHAWQTLRKS-VQHRSGDNRNNCRGFLVEMGTAK 295
FCCN Q V GD R N FLV+ G K
Sbjct: 67 FCCNGTVVQDSELGQVIQLQGDQRKNVSTFLVQAGLVK 104
>At4g27130.1 68417.m03899 eukaryotic translation initiation factor
SUI1, putative similar to SP|P32911 Protein translation
factor SUI1 {Saccharomyces cerevisiae}; contains Pfam
profile PF01253: Translation initiation factor SUI1
Length = 113
Score = 27.1 bits (57), Expect = 5.6
Identities = 15/38 (39%), Positives = 16/38 (42%), Gaps = 1/38 (2%)
Frame = +2
Query: 185 FCCNNHAWQTLRKS-VQHRSGDNRNNCRGFLVEMGTAK 295
FCCN Q V GD R N FLV+ G K
Sbjct: 67 FCCNGTVVQDSELGQVIQLQGDQRKNVSTFLVQAGLVK 104
>At3g51190.1 68416.m05604 60S ribosomal protein L8 (RPL8B) ribosomal
protein L8, cytosolic - Arabidopsis thaliana, PIR:T04582
Length = 260
Score = 27.1 bits (57), Expect = 5.6
Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Frame = -1
Query: 396 HHRK--LRFKFCRHHKWNGYLMPVFTRNIPDPCFTSLAVPISTRNPRQLLRLSPLLCCTD 223
HHRK +F+ + + NGYL + T I DP + ++ R+P + ++ L +
Sbjct: 22 HHRKGPAKFRSLDYGERNGYLKGLVTEIIHDPGRGAPLARVAFRHPFRYMKQKELFVAAE 81
>At3g17650.1 68416.m02254 oligopeptide transporter OPT family
protein similar to iron-phytosiderophore transporter
protein yellow stripe 1 [Zea mays] GI:10770865; contains
Pfam profile PF03169: OPT oligopeptide transporter
protein
Length = 714
Score = 27.1 bits (57), Expect = 5.6
Identities = 12/44 (27%), Positives = 20/44 (45%)
Frame = -2
Query: 347 GTSCRYLLGTFQTHALQVWQYPFQLEILGNYCGYLRFCAALISV 216
G +C + F T L+ +QY F + Y G C +I++
Sbjct: 257 GENCGF--SNFPTFGLKAYQYKFYFDFSATYVGVGMICPYIINI 298
>At2g43220.1 68415.m05372 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 538
Score = 27.1 bits (57), Expect = 5.6
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = -1
Query: 357 KWNGYLMPVFTRNIPDPCFTSLAVPISTRNP 265
KW+ Y +P T+NI PC + + + + P
Sbjct: 46 KWHPYCVPRSTKNINHPCHPNHPLEVLLQGP 76
>At1g55700.1 68414.m06378 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 679
Score = 27.1 bits (57), Expect = 5.6
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = +1
Query: 286 YCQTCKAWVWNVPSKYRHEVPIPFVMPTKLKTKFS 390
+C TC+ V + Y HE+ PF LK FS
Sbjct: 110 HCPTCEMCYHKVCNLYPHEIRHPFHAQHPLKLTFS 144
>At1g54290.1 68414.m06189 eukaryotic translation initiation factor
SUI1, putative similar to P|P32911 Protein translation
factor SUI1 {Saccharomyces cerevisiae}; contains Pfam
profile PF01253: Translation initiation factor SUI1
Length = 113
Score = 27.1 bits (57), Expect = 5.6
Identities = 15/38 (39%), Positives = 16/38 (42%), Gaps = 1/38 (2%)
Frame = +2
Query: 185 FCCNNHAWQTLRKS-VQHRSGDNRNNCRGFLVEMGTAK 295
FCCN Q V GD R N FLV+ G K
Sbjct: 67 FCCNGTVVQDSELGQVIQLQGDQRKNVSTFLVQAGLVK 104
>At4g14860.1 68417.m02283 ovate family protein 58% similar to ovate
protein (GI:23429649) [Lycopersicon esculentum];
contains TIGRFAM TIGR01568 : uncharacterized
plant-specific domain TIGR01568
Length = 182
Score = 26.2 bits (55), Expect = 9.8
Identities = 16/51 (31%), Positives = 22/51 (43%)
Frame = -2
Query: 185 NFISXXXXXXXXXXXRLDKTAVDKEVNVSNSNAQAVFVDTRSVGVNNFNVL 33
NF+ L + + VSN NAQ+ T S+ +NNFN L
Sbjct: 3 NFLRKKLHLCFSSSGGLSPSIPSSPIIVSNHNAQSHPHHTPSIFINNFNSL 53
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,758,817
Number of Sequences: 28952
Number of extensions: 199823
Number of successful extensions: 504
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 498
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 504
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 702840360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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