Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0315
         (523 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19G12.11 |coq9||ubiquinone biosynthesis protein Coq9 |Schizo...    29   0.32 
SPCC338.04 |cid2||caffeine induced death protein Cid2|Schizosacc...    29   0.42 
SPAC22F3.11c |snu23||U4/U6 x U5 tri-snRNP complex subunit Snu23|...    25   5.2  
SPBC19F8.07 |crk1|mop1, mcs6|cyclin-dependent kinase activating ...    25   6.8  
SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyc...    25   9.0  
SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces pomb...    25   9.0  
SPBC4F6.17c |||mitochondrial matrix chaperone Hsp78 |Schizosacch...    25   9.0  

>SPAC19G12.11 |coq9||ubiquinone biosynthesis protein Coq9
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 250

 Score = 29.5 bits (63), Expect = 0.32
 Identities = 15/41 (36%), Positives = 24/41 (58%)
 Frame = +1

Query: 376 LAEYAGPLFVYLG*SKTVDFIWYTNVKS*ASSYSCSNMLVS 498
           LAE +  + +YL   K+ DF WYT   + ++ YS S + +S
Sbjct: 160 LAELSDEI-LYLAQDKSADFQWYTKRAAISAIYSASELFMS 199


>SPCC338.04 |cid2||caffeine induced death protein
           Cid2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 167

 Score = 29.1 bits (62), Expect = 0.42
 Identities = 15/30 (50%), Positives = 21/30 (70%), Gaps = 3/30 (10%)
 Frame = +1

Query: 133 LSVSSAK---PLGKIHVTGESSIKNVKEKI 213
           LS++SAK   P GK+H T E   +NVK+K+
Sbjct: 31  LSLNSAKWEYPEGKVHETQEERCQNVKKKL 60


>SPAC22F3.11c |snu23||U4/U6 x U5 tri-snRNP complex subunit
           Snu23|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 151

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 10/35 (28%), Positives = 23/35 (65%)
 Frame = +1

Query: 184 SSIKNVKEKIQQSVKKSLYPDRQASNWRLKANVER 288
           ++++ VKE+++   ++ L P++ +  + LK  VER
Sbjct: 70  ATLEEVKERMEYWRRQLLEPEKGSEEYSLKERVER 104


>SPBC19F8.07 |crk1|mop1, mcs6|cyclin-dependent kinase activating
           kinase Crk1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 335

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = -1

Query: 430 PRSLITPSKQRVVQHIQLKHIPP 362
           P   +  S Q++  ++++KHIPP
Sbjct: 227 PEPEVIKSMQQLPNYVEMKHIPP 249


>SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 354

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +2

Query: 275 QTLKDEDTLNSLNIQDGPS 331
           + LKDE++L +  IQDG S
Sbjct: 51  RVLKDEESLKTYKIQDGHS 69


>SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 508

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = +1

Query: 109 KHNMEIEILSVSSAKPLGKI-HVTGESSIKNVKEKIQQSVKKS 234
           + ++E++I+     K   K+    GESS K  KEK  +  KKS
Sbjct: 442 QEDVEMDIVIEKKKKKSSKLKEADGESSKKEKKEKKDKKHKKS 484


>SPBC4F6.17c |||mitochondrial matrix chaperone Hsp78
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 803

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 8/28 (28%), Positives = 16/28 (57%)
 Frame = -1

Query: 433 NPRSLITPSKQRVVQHIQLKHIPPRYLS 350
           +P + +TP  +  V  +  K+ PP +L+
Sbjct: 662 DPSTTVTPKSRDAVMDVVQKYYPPEFLN 689


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,067,463
Number of Sequences: 5004
Number of extensions: 40315
Number of successful extensions: 111
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)