Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0315
         (523 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_03_0239 + 14084920-14085141,14085394-14085641,14086137-140864...    32   0.24 
02_02_0261 + 8389683-8389707,8389888-8389982                           28   5.2  

>01_03_0239 +
           14084920-14085141,14085394-14085641,14086137-14086461,
           14090401-14090658
          Length = 350

 Score = 32.3 bits (70), Expect = 0.24
 Identities = 14/26 (53%), Positives = 17/26 (65%)
 Frame = -1

Query: 424 SLITPSKQRVVQHIQLKHIPPRYLSP 347
           SL  PS Q +V  I + H+PPRYL P
Sbjct: 3   SLPVPSVQAMVAAIGIDHVPPRYLRP 28


>02_02_0261 + 8389683-8389707,8389888-8389982
          Length = 39

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 10/20 (50%), Positives = 16/20 (80%)
 Frame = -1

Query: 412 PSKQRVVQHIQLKHIPPRYL 353
           P   RV+ H+Q+++IPPRY+
Sbjct: 11  PHVARVLCHLQVENIPPRYV 30


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,423,022
Number of Sequences: 37544
Number of extensions: 228511
Number of successful extensions: 538
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 533
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 538
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)