Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0315
         (523 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50092| Best HMM Match : Gal-3-0_sulfotr (HMM E-Value=2.1e-33)       30   1.0  
SB_7148| Best HMM Match : MoCF_biosynth (HMM E-Value=3.6e-26)          29   3.1  
SB_59515| Best HMM Match : Pox_A_type_inc (HMM E-Value=3.2e-31)        28   5.4  
SB_10831| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  
SB_49663| Best HMM Match : TolA (HMM E-Value=0.059)                    27   9.4  
SB_33818| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  
SB_32025| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  

>SB_50092| Best HMM Match : Gal-3-0_sulfotr (HMM E-Value=2.1e-33)
          Length = 386

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 23/71 (32%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
 Frame = -1

Query: 430 PRSLITPSKQRVVQHIQLKHIPPRYLSPDLLKKAWTVLNIKGIQSIFIFQR-LPLASSLR 254
           P +++ P K      I L+H    + S     K W  LNIKG  SI I  + L   SS  
Sbjct: 100 PMNILFPKKDTKYLTI-LRHPVTHFESIFNFMKLWDSLNIKGRDSIEIMDKFLQGNSSFN 158

Query: 253 PDDLGIEISSR 221
           P+ L  ++++R
Sbjct: 159 PEYLSSKLTAR 169


>SB_7148| Best HMM Match : MoCF_biosynth (HMM E-Value=3.6e-26)
          Length = 501

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +1

Query: 190 IKNVKEKIQQSVKKSLYPDRQASNWRLKANVE 285
           + NV ++ ++SV    YP+   + W +K NVE
Sbjct: 202 LDNVVQRFKESVSIGSYPECTNAGWHVKLNVE 233


>SB_59515| Best HMM Match : Pox_A_type_inc (HMM E-Value=3.2e-31)
          Length = 2122

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 27/99 (27%), Positives = 45/99 (45%), Gaps = 2/99 (2%)
 Frame = +1

Query: 67   LIIELSRY*YCYTDKHNMEIEILSVSSAKPLGKIHVTGESSIKNVK--EKIQQSVKKSLY 240
            LI ++ +  +     H+M +    VSS K L  I        K+VK  E  ++S+  S Y
Sbjct: 1944 LIFDVDKQRHTQQRPHSMYVSYTDVSSRKELSDISSISIEKGKDVKRTESERKSLDSSKY 2003

Query: 241  PDRQASNWRLKANVER*RYSEFP*YSRRSKLFLKDLDSS 357
             D++ S  R +  +++ R++     SR S     D D S
Sbjct: 2004 -DQRESTRRNETELDKDRFASRS-SSRYSSRVTSDQDIS 2040


>SB_10831| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 687

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -1

Query: 385 IQLKHIPPRYLSPDLLKKAWTVLNIKGIQSIFIF 284
           I LKH+ P  +   L     T  N +GIQ++F+F
Sbjct: 372 IGLKHLNPVLIQRRLWVSKGTGKNARGIQNLFVF 405


>SB_49663| Best HMM Match : TolA (HMM E-Value=0.059)
          Length = 591

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = +3

Query: 156 ARQDSRYR*KFDKECKRKNPTEREEISIPRSSGLKLEAKGKR*K 287
           ++ +   R K D+E KRK   E E   + +    K+E +GK+ K
Sbjct: 457 SKDEEENRRKADEERKRKEQEEAERNRVVQEEKRKIEQEGKQRK 500


>SB_33818| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 469

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = -1

Query: 385 IQLKHIPPRYLSPDLLKKAWTVLNIKGIQSIFIFQRLPLASSLRPD 248
           I  +H   R L  DLL   W  +NI+ +     +++L   S+  PD
Sbjct: 194 ISQRHNELRDLEADLLDMVWNDVNIEPVLQDITWEQLGRGSNTAPD 239


>SB_32025| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 103

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = -3

Query: 293 LHLSTFAFSLQFEA*RSGYRDFFTLCWIFSFTFFIELSP 177
           L L++   SL   A  + +  F   CW F+  FF  LSP
Sbjct: 54  LDLNSGGRSLWKNASNAAFLRFLAFCWPFAHMFFPALSP 92


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,845,039
Number of Sequences: 59808
Number of extensions: 281924
Number of successful extensions: 1291
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1269
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1291
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)