Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0315
         (523 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006608-6|AAF39753.1|  308|Caenorhabditis elegans Steroid alpha...    44   9e-05
Z81119-1|CAB03331.1|  363|Caenorhabditis elegans Hypothetical pr...    29   2.7  
Z75953-3|CAB00100.1|  611|Caenorhabditis elegans Hypothetical pr...    28   3.5  
AF166171-1|AAD49860.1|  611|Caenorhabditis elegans adducin-head-...    28   3.5  
U29379-7|ABC71826.1|  710|Caenorhabditis elegans Patterned expre...    27   8.1  
U29379-6|AAF99981.3|  677|Caenorhabditis elegans Patterned expre...    27   8.1  
U29379-5|ABC71825.1|  777|Caenorhabditis elegans Patterned expre...    27   8.1  

>AC006608-6|AAF39753.1|  308|Caenorhabditis elegans Steroid alpha
           reductase familyprotein 1 protein.
          Length = 308

 Score = 43.6 bits (98), Expect = 9e-05
 Identities = 29/82 (35%), Positives = 47/82 (57%), Gaps = 3/82 (3%)
 Frame = +1

Query: 172 VTGESSIKNVKEKIQQSVKKSLYPDRQASNWRLKAN--VER*RYSEFP*YSRRSKLFLKD 345
           ++G  +IK +K++I Q  K  L  +RQA     K     +  + S+    S+++ L+++D
Sbjct: 23  ISGSETIKAIKKRIAQK-KLKLTEERQALRVEPKGKPLADDQKLSDLGLSSQKAVLYVRD 81

Query: 346 LDSSILAECV-LAEYAGPLFVY 408
           L   I  + V +AEYAGPLFVY
Sbjct: 82  LGPQIAWKTVFMAEYAGPLFVY 103



 Score = 27.9 bits (59), Expect = 4.7
 Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 8/85 (9%)
 Frame = +2

Query: 281 LKDEDTLNSLNI--QDGPSFF*KIWTQVSWRNVF*LNMLDHS--LFTWG--DQRPWILYG 442
           L D+  L+ L +  Q    +   +  Q++W+ VF   M +++  LF +     RP  +YG
Sbjct: 59  LADDQKLSDLGLSSQKAVLYVRDLGPQIAWKTVF---MAEYAGPLFVYPLFYLRPTFIYG 115

Query: 443 TQT--SSPEQVATVAAICWSAHYAK 511
                ++      +A   WS HYAK
Sbjct: 116 QAAVNATMHPAVQIAFFAWSFHYAK 140


>Z81119-1|CAB03331.1|  363|Caenorhabditis elegans Hypothetical
           protein T10H4.2 protein.
          Length = 363

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
 Frame = -2

Query: 252 LTIWV*RF--LHALLDFFFYILYRTFTCNVNLAERFRARYAQNFNLHIV 112
           +TIW   +  + +LL   F+  Y + T  + L +RF  RY   + L+I+
Sbjct: 95  VTIWCSFYAMMLSLLSIHFFYRYTSVTAPILLMKRFSCRYIFKYTLYIL 143


>Z75953-3|CAB00100.1|  611|Caenorhabditis elegans Hypothetical
           protein F57F5.4a protein.
          Length = 611

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 16/53 (30%), Positives = 25/53 (47%)
 Frame = -1

Query: 487 YCCNCSYLLRT*RLCTI*NPRSLITPSKQRVVQHIQLKHIPPRYLSPDLLKKA 329
           YC N SY     RL  + N + L+ P K+  V +I +      Y  P+L+  +
Sbjct: 15  YCKNVSYNFLIQRLAEVSNRKCLLLPKKKNRVDYISIMQTAEFY--PELVNSS 65


>AF166171-1|AAD49860.1|  611|Caenorhabditis elegans
           adducin-head-domain-related protein protein.
          Length = 611

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 16/53 (30%), Positives = 25/53 (47%)
 Frame = -1

Query: 487 YCCNCSYLLRT*RLCTI*NPRSLITPSKQRVVQHIQLKHIPPRYLSPDLLKKA 329
           YC N SY     RL  + N + L+ P K+  V +I +      Y  P+L+  +
Sbjct: 15  YCKNVSYNFLIQRLAEVSNRKCLLLPKKKNRVDYISIMQTAEFY--PELVNSS 65


>U29379-7|ABC71826.1|  710|Caenorhabditis elegans Patterned
           expression site protein22, isoform c protein.
          Length = 710

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = +1

Query: 331 LFLKDLDSSILAECVLAEYAGPLFVYLG*SKTVDFIWYTNVK 456
           +FLKDL  S+  +  LA +  P+F        V F W T+ K
Sbjct: 532 MFLKDLSESMKLDMSLAMFLVPIFGVFNTIGRVFFGWLTDQK 573


>U29379-6|AAF99981.3|  677|Caenorhabditis elegans Patterned
           expression site protein22, isoform a protein.
          Length = 677

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = +1

Query: 331 LFLKDLDSSILAECVLAEYAGPLFVYLG*SKTVDFIWYTNVK 456
           +FLKDL  S+  +  LA +  P+F        V F W T+ K
Sbjct: 477 MFLKDLSESMKLDMSLAMFLVPIFGVFNTIGRVFFGWLTDQK 518


>U29379-5|ABC71825.1|  777|Caenorhabditis elegans Patterned
           expression site protein22, isoform b protein.
          Length = 777

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = +1

Query: 331 LFLKDLDSSILAECVLAEYAGPLFVYLG*SKTVDFIWYTNVK 456
           +FLKDL  S+  +  LA +  P+F        V F W T+ K
Sbjct: 532 MFLKDLSESMKLDMSLAMFLVPIFGVFNTIGRVFFGWLTDQK 573


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,230,551
Number of Sequences: 27780
Number of extensions: 217179
Number of successful extensions: 511
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 502
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 511
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)