Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0315
         (523 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g36740.1 68418.m04402 PHD finger family protein                     31   0.62 
At5g36670.1 68418.m04388 PHD finger family protein                     31   0.62 
At4g25300.1 68417.m03638 oxidoreductase, 2OG-Fe(II) oxygenase fa...    28   3.3  
At3g54210.1 68416.m05992 ribosomal protein L17 family protein co...    28   3.3  
At4g36195.1 68417.m05150 serine carboxypeptidase S28 family prot...    28   4.4  
At3g09790.1 68416.m01163 polyubiquitin (UBQ8) identical to polyu...    28   4.4  
At1g17010.1 68414.m02065 oxidoreductase, 2OG-Fe(II) oxygenase fa...    28   4.4  
At3g55160.1 68416.m06126 expressed protein                             27   7.7  
At1g17020.1 68414.m02067 oxidoreductase, 2OG-Fe(II) oxygenase fa...    27   7.7  

>At5g36740.1 68418.m04402 PHD finger family protein
          Length = 1179

 Score = 30.7 bits (66), Expect = 0.62
 Identities = 15/39 (38%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
 Frame = +1

Query: 172 VTGESSIKNVKEKIQQSVKKSLYPDR-QASNWRLKANVE 285
           V+G SS+  VKE+++Q   KSL P+  +  ++R +  VE
Sbjct: 90  VSGGSSVDEVKEEVKQECVKSLVPEEIRGDDFRSEVKVE 128


>At5g36670.1 68418.m04388 PHD finger family protein
          Length = 1193

 Score = 30.7 bits (66), Expect = 0.62
 Identities = 15/39 (38%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
 Frame = +1

Query: 172 VTGESSIKNVKEKIQQSVKKSLYPDR-QASNWRLKANVE 285
           V+G SS+  VKE+++Q   KSL P+  +  ++R +  VE
Sbjct: 90  VSGGSSVDEVKEEVKQECVKSLVPEEIRGDDFRSEVKVE 128


>At4g25300.1 68417.m03638 oxidoreductase, 2OG-Fe(II) oxygenase
           family protein similar to flavonol synthase [Petunia x
           hybrida][GI:311658], anthocyanidin synthase [Torenia
           fournieri][GI:12583673]; contains PF03171 2OG-Fe(II)
           oxygenase superfamily domain
          Length = 356

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -1

Query: 424 SLITPSKQRVVQHIQLKHIPPRYLSPD 344
           S+I PS Q +V+   +  +PPRY+  D
Sbjct: 10  SIIVPSVQEMVKEKMITTVPPRYVRSD 36


>At3g54210.1 68416.m05992 ribosomal protein L17 family protein
           contains Pfam profile: PF01196 ribosomal protein L17
          Length = 211

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = -1

Query: 346 DLLKKAWTVLNIKGIQSIFIFQRLPLASSLRPDDLGIEISSRSV 215
           D + + W++ ++K         RLP +SS RP  L + ISS S+
Sbjct: 14  DSVSRVWSMSSLKSALPSTASLRLPSSSSRRPVTLRLPISSPSL 57


>At4g36195.1 68417.m05150 serine carboxypeptidase S28 family protein
           contains Pfam PF05577: Serine carboxypeptidase S28
          Length = 488

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
 Frame = +2

Query: 401 LFTWGDQRPWILYGTQTSSPEQVATVAAI--CWSAHYAKGC 517
           +FT G Q PW     QTSSPE  + +     C      +GC
Sbjct: 402 IFTNGSQDPWRHASKQTSSPELPSYIVTCHNCGHGSDLRGC 442


>At3g09790.1 68416.m01163 polyubiquitin (UBQ8) identical to
           polyubiquitin (ubq8) GI:870793, GB:L05917 [Arabidopsis
           thaliana] (Genetics 139 (2), 921-939 (1995))
          Length = 631

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 14/29 (48%), Positives = 19/29 (65%)
 Frame = +1

Query: 166 IHVTGESSIKNVKEKIQQSVKKSLYPDRQ 252
           + V    +I NVKEKIQ  VK+ + PD+Q
Sbjct: 566 LEVESSDTIANVKEKIQ--VKEGIKPDQQ 592


>At1g17010.1 68414.m02065 oxidoreductase, 2OG-Fe(II) oxygenase
           family protein similar to flavonol synthase [Petunia x
           hybrida][GI:311658], [Solanum tuberosum][GI:1039356];
           contains PF03171 2OG-Fe(II) oxygenase superfamily domain
          Length = 361

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 19/59 (32%), Positives = 27/59 (45%)
 Frame = -1

Query: 424 SLITPSKQRVVQHIQLKHIPPRYLSPDLLKKAWTVLNIKGIQSIFIFQRLPLASSLRPD 248
           S++ PS Q +V+   +  +PPRY+  D  K    V +   I  I I     L SS   D
Sbjct: 11  SILVPSVQEMVKDKMITTVPPRYVRYDQDKTEVVVHDSGLISEIPIIDMNRLCSSTAVD 69


>At3g55160.1 68416.m06126 expressed protein
          Length = 2149

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 16/42 (38%), Positives = 23/42 (54%)
 Frame = -2

Query: 510 LA*CADQHIAATVATCSGLDVCVPYKIHGL*SPQVNKEWSSI 385
           LA   D ++AA V+ C+ L VC+  +  GL   Q    WSS+
Sbjct: 247 LAFSRDCYVAAGVSFCAALQVCLKDEELGLFIAQCIFCWSSV 288


>At1g17020.1 68414.m02067 oxidoreductase, 2OG-Fe(II) oxygenase
           family protein similar to flavonol synthase [Petunia x
           hybrida][GI:311658], leucoanthocyanidin dioxygenase
           [Malus domestica][SP|P51091]; contains PF03171
           2OG-Fe(II) oxygenase superfamily domain
          Length = 358

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -1

Query: 424 SLITPSKQRVVQHIQLKHIPPRYLSPD 344
           S++ PS Q +V+   +  +PPRY+  D
Sbjct: 11  SILVPSVQEMVKEKTITTVPPRYVRSD 37


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,501,809
Number of Sequences: 28952
Number of extensions: 199207
Number of successful extensions: 500
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 487
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 500
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)