Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0314
         (502 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292362-1|CAL23174.2|  398|Tribolium castaneum gustatory recept...    25   0.38 
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    23   2.0  
X72339-1|CAA51066.1|  133|Tribolium castaneum abdominal protein.       22   2.7  
AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax pr...    22   2.7  
AM292334-1|CAL23146.2|  390|Tribolium castaneum gustatory recept...    22   2.7  
AM292333-1|CAL23145.2|  316|Tribolium castaneum gustatory recept...    22   2.7  
AF146649-1|AAD38009.1|   96|Tribolium castaneum ultrathorax prot...    22   2.7  
AF017415-2|AAB70263.1|  284|Tribolium castaneum abdominal-A prot...    22   2.7  
AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII pr...    22   2.7  
AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax pr...    21   4.7  
AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax pr...    21   4.7  
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    21   4.7  
AM292359-1|CAL23171.2|  436|Tribolium castaneum gustatory recept...    21   4.7  
AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax pr...    21   4.7  
AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax pr...    21   4.7  
AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.           21   4.7  
AF264695-1|AAG13009.1|  100|Tribolium castaneum cephalothorax pr...    21   4.7  
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    21   4.7  
AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduce...    21   4.7  
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    21   8.2  

>AM292362-1|CAL23174.2|  398|Tribolium castaneum gustatory receptor
           candidate 41 protein.
          Length = 398

 Score = 25.0 bits (52), Expect = 0.38
 Identities = 17/52 (32%), Positives = 23/52 (44%)
 Frame = -3

Query: 488 NTIFIYVATYLCMYITILLIFL*EFKGNLNICLIQ*R*L*TILVKEHLNIFN 333
           N +  YV     +YI    + +     NLN  LI    L   +VKEH N+ N
Sbjct: 166 NFVNEYVQAIEVLYICSYTVLIRNKISNLNTSLIHSTHLNGDIVKEHQNLHN 217


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 22.6 bits (46), Expect = 2.0
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -3

Query: 494  NLNTIFIYVATYLCMYITILLIFL*EFKGN 405
            NLN +   VA  L + + I++I +   KGN
Sbjct: 1607 NLNLVVPVVAAVLVIIVAIIVICVLRGKGN 1636


>X72339-1|CAA51066.1|  133|Tribolium castaneum abdominal protein.
          Length = 133

 Score = 22.2 bits (45), Expect = 2.7
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = -2

Query: 294 RKRKLF*GHFLCL*RRKINVINKKQRIGL 208
           R+R++   H LCL  R+I +  + +R+ L
Sbjct: 33  RRRRIEIAHALCLTERQIKIWFQNRRMKL 61


>AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax
           protein.
          Length = 314

 Score = 22.2 bits (45), Expect = 2.7
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = -2

Query: 294 RKRKLF*GHFLCL*RRKINVINKKQRIGL 208
           R+R++   H LCL  R+I +  + +R+ L
Sbjct: 250 RRRRIEMAHALCLTERQIKIWFQNRRMKL 278


>AM292334-1|CAL23146.2|  390|Tribolium castaneum gustatory receptor
           candidate 13 protein.
          Length = 390

 Score = 22.2 bits (45), Expect = 2.7
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -2

Query: 486 YNFYLCSHVSMYVYY 442
           YN Y+C  VS + Y+
Sbjct: 195 YNIYVCQTVSNFEYF 209


>AM292333-1|CAL23145.2|  316|Tribolium castaneum gustatory receptor
           candidate 12 protein.
          Length = 316

 Score = 22.2 bits (45), Expect = 2.7
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -2

Query: 486 YNFYLCSHVSMYVYY 442
           YN Y+C  VS + Y+
Sbjct: 121 YNIYVCQTVSNFEYF 135


>AF146649-1|AAD38009.1|   96|Tribolium castaneum ultrathorax
           protein.
          Length = 96

 Score = 22.2 bits (45), Expect = 2.7
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = -2

Query: 294 RKRKLF*GHFLCL*RRKINVINKKQRIGL 208
           R+R++   H LCL  R+I +  + +R+ L
Sbjct: 32  RRRRIEMAHALCLTERQIKIWFQNRRMKL 60


>AF017415-2|AAB70263.1|  284|Tribolium castaneum abdominal-A
           protein.
          Length = 284

 Score = 22.2 bits (45), Expect = 2.7
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = -2

Query: 294 RKRKLF*GHFLCL*RRKINVINKKQRIGL 208
           R+R++   H LCL  R+I +  + +R+ L
Sbjct: 184 RRRRIEIAHALCLTERQIKIWFQNRRMKL 212


>AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII
           protein.
          Length = 343

 Score = 22.2 bits (45), Expect = 2.7
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = -2

Query: 294 RKRKLF*GHFLCL*RRKINVINKKQRIGL 208
           R+R++   H LCL  R+I +  + +R+ L
Sbjct: 243 RRRRIEIAHALCLTERQIKIWFQNRRMKL 271


>AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 21.4 bits (43), Expect = 4.7
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = -2

Query: 294 RKRKLF*GHFLCL*RRKINVINKKQRI 214
           R+R++   H LCL  R+I +  + +R+
Sbjct: 247 RRRRIEIAHALCLTERQIKIWFQNRRM 273


>AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 21.4 bits (43), Expect = 4.7
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = -2

Query: 294 RKRKLF*GHFLCL*RRKINVINKKQRI 214
           R+R++   H LCL  R+I +  + +R+
Sbjct: 247 RRRRIEIAHALCLTERQIKIWFQNRRM 273


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 21.4 bits (43), Expect = 4.7
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = -2

Query: 294 RKRKLF*GHFLCL*RRKINVINKKQRI 214
           R+R++   H LCL  R+I +  + +R+
Sbjct: 269 RRRRIEIAHALCLTERQIKIWFQNRRM 295


>AM292359-1|CAL23171.2|  436|Tribolium castaneum gustatory receptor
           candidate 38 protein.
          Length = 436

 Score = 21.4 bits (43), Expect = 4.7
 Identities = 5/14 (35%), Positives = 11/14 (78%)
 Frame = -3

Query: 473 YVATYLCMYITILL 432
           Y  T+LC+Y+ +++
Sbjct: 286 YTVTFLCLYLFLII 299


>AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 21.4 bits (43), Expect = 4.7
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = -2

Query: 294 RKRKLF*GHFLCL*RRKINVINKKQRI 214
           R+R++   H LCL  R+I +  + +R+
Sbjct: 247 RRRRIEIAHALCLTERQIKIWFQNRRM 273


>AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax
           protein.
          Length = 268

 Score = 21.4 bits (43), Expect = 4.7
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = -2

Query: 294 RKRKLF*GHFLCL*RRKINVINKKQRI 214
           R+R++   H LCL  R+I +  + +R+
Sbjct: 203 RRRRIEIAHALCLTERQIKIWFQNRRM 229


>AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.
          Length = 312

 Score = 21.4 bits (43), Expect = 4.7
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = -2

Query: 294 RKRKLF*GHFLCL*RRKINVINKKQRI 214
           R+R++   H LCL  R+I +  + +R+
Sbjct: 247 RRRRIEIAHALCLTERQIKIWFQNRRM 273


>AF264695-1|AAG13009.1|  100|Tribolium castaneum cephalothorax
           protein.
          Length = 100

 Score = 21.4 bits (43), Expect = 4.7
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = -2

Query: 294 RKRKLF*GHFLCL*RRKINVINKKQRI 214
           R+R++   H LCL  R+I +  + +R+
Sbjct: 35  RRRRIEIAHALCLTERQIKIWFQNRRM 61


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 21.4 bits (43), Expect = 4.7
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = -2

Query: 294 RKRKLF*GHFLCL*RRKINVINKKQRI 214
           R+R++   H LCL  R+I +  + +R+
Sbjct: 271 RRRRIEIAHALCLTERQIKIWFQNRRM 297


>AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduced
           Scr protein.
          Length = 312

 Score = 21.4 bits (43), Expect = 4.7
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = -2

Query: 294 RKRKLF*GHFLCL*RRKINVINKKQRI 214
           R+R++   H LCL  R+I +  + +R+
Sbjct: 247 RRRRIEIAHALCLTERQIKIWFQNRRM 273


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 20.6 bits (41), Expect = 8.2
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = -1

Query: 181 NTHWLPCSDVTREASC*MFWSPADLHKNAAT 89
           N  +   +D  R++   +FWSPA      AT
Sbjct: 89  NPTYYNLADPARDSRKGLFWSPAATAAATAT 119


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 123,085
Number of Sequences: 336
Number of extensions: 2827
Number of successful extensions: 20
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 11839801
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)