Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0314
         (502 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomy...    28   0.91 
SPBC691.05c ||SPBP22H7.01c|membrane transporter |Schizosaccharom...    27   1.6  
SPBC530.08 |||transcription factor |Schizosaccharomyces pombe|ch...    26   2.8  
SPCC1672.09 |||triglyceride lipase-cholesterol esterase |Schizos...    25   6.4  

>SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1583

 Score = 27.9 bits (59), Expect = 0.91
 Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 4/66 (6%)
 Frame = +1

Query: 271  SLEQFSFPHI--SCF*ITIISDVLNI--FKCSLTKIVYNHRYCIKQMFKLPLNSHKNINK 438
            SL Q   P I  SCF   +   +L I   KC + + + N R C   +  L  N+ K   +
Sbjct: 1298 SLMQHFLPCILDSCFSKNLRYSMLGIEILKCIIHQGLVNPRMCFSTIIALESNAIKETRE 1357

Query: 439  IVIYIH 456
            + I +H
Sbjct: 1358 VAILLH 1363


>SPBC691.05c ||SPBP22H7.01c|membrane transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 668

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -3

Query: 83  LNNAQFRNEYLYFLNNIQ 30
           LN  + RN+Y+YFL N Q
Sbjct: 420 LNPLRLRNQYIYFLTNAQ 437


>SPBC530.08 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 815

 Score = 26.2 bits (55), Expect = 2.8
 Identities = 13/54 (24%), Positives = 25/54 (46%)
 Frame = +2

Query: 20  SLQIVYYLKNTNIHYEIVHYLVTSGCVFV*VRWGPKHSATGLSCHITTGQPMCI 181
           +LQ+VYY     I+  ++HYL         ++   + +A  L+C       +C+
Sbjct: 489 NLQLVYYSFRMLIYRPLLHYLEADSPAMQALKVPDRQTAFTLACKCVDSAIVCV 542


>SPCC1672.09 |||triglyceride lipase-cholesterol esterase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 467

 Score = 25.0 bits (52), Expect = 6.4
 Identities = 9/36 (25%), Positives = 19/36 (52%)
 Frame = +1

Query: 382 YCIKQMFKLPLNSHKNINKIVIYIHRYVAT*IKIVL 489
           YC+ Q+F     +  +  ++V + H Y  T +K ++
Sbjct: 304 YCLSQLFNWSCQNISSYQRLVSFAHLYSYTSVKCLV 339


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,061,224
Number of Sequences: 5004
Number of extensions: 41888
Number of successful extensions: 78
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 198176188
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)