Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0314
         (502 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0308 + 2318010-2318708,2318802-2318890,2319006-2319105,231...    29   1.6  
03_06_0122 - 31815023-31816357                                         27   8.5  

>12_01_0308 +
           2318010-2318708,2318802-2318890,2319006-2319105,
           2319349-2319606,2319875-2319955,2319956-2320125,
           2320358-2320628
          Length = 555

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +2

Query: 140 GLSCHITTGQPMCIITSDDKLYYSPI 217
           G SCH+  G+  CI +S D L   P+
Sbjct: 509 GASCHVLVGEVHCIFSSADALLAKPL 534


>03_06_0122 - 31815023-31816357
          Length = 444

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +1

Query: 112 PLGTKTFSNWPLLSHHYR 165
           P G+  FS WPL S+ YR
Sbjct: 358 PRGSGDFSQWPLASYSYR 375


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,523,452
Number of Sequences: 37544
Number of extensions: 212417
Number of successful extensions: 366
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 361
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 366
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1059318940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)