Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0314
         (502 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_1160| Best HMM Match : RRM_1 (HMM E-Value=1.5e-07)                  28   3.8  
SB_41439| Best HMM Match : SWIM (HMM E-Value=0.088)                    27   6.6  
SB_5758| Best HMM Match : fn3 (HMM E-Value=6.6e-18)                    27   8.7  

>SB_1160| Best HMM Match : RRM_1 (HMM E-Value=1.5e-07)
          Length = 252

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 13/49 (26%), Positives = 24/49 (48%)
 Frame = +1

Query: 343 FKCSLTKIVYNHRYCIKQMFKLPLNSHKNINKIVIYIHRYVAT*IKIVL 489
           F C+    VYN +   K++   PL  +K  N + I++   V   +K ++
Sbjct: 64  FSCTRRLSVYNTKISAKRLLSQPLKKNKKTNTMSIHVPTNVEDSVKCLV 112


>SB_41439| Best HMM Match : SWIM (HMM E-Value=0.088)
          Length = 921

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 15/57 (26%), Positives = 24/57 (42%)
 Frame = +2

Query: 41  LKNTNIHYEIVHYLVTSGCVFV*VRWGPKHSATGLSCHITTGQPMCIITSDDKLYYS 211
           +KNTN  +++   +   GC  + + W   HS   L        P  +I    KL+ S
Sbjct: 218 VKNTNCPFQMFVKIACDGCCTIEITWDHNHSVDTLEASNFHDFPPEVIDKVMKLFES 274


>SB_5758| Best HMM Match : fn3 (HMM E-Value=6.6e-18)
          Length = 1191

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = -1

Query: 295 EEKKIVLGTFFMFMKKKNKCYQ*KTANWTIVK 200
           ++KK  L   F F K+KNKCY  K + +  VK
Sbjct: 69  KDKKRRLLHAFTFGKQKNKCYYTKASKYKEVK 100


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,362,415
Number of Sequences: 59808
Number of extensions: 286920
Number of successful extensions: 527
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 422
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 523
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1087245449
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)