Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0313
         (559 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q5HTI7 Cluster: Cell division protein FtsX, putative; n...    36   0.64 
UniRef50_A5I0Y3 Cluster: Putative membrane protein; n=4; Clostri...    34   2.6  

>UniRef50_Q5HTI7 Cluster: Cell division protein FtsX, putative;
           n=12; Campylobacter|Rep: Cell division protein FtsX,
           putative - Campylobacter jejuni (strain RM1221)
          Length = 268

 Score = 35.9 bits (79), Expect = 0.64
 Identities = 17/41 (41%), Positives = 26/41 (63%)
 Frame = +2

Query: 83  YVTHLSILK*NLFFMFVFIFSSLRNISLKHIKCIVHRQYVI 205
           + THLS++   LF MF F F  + N +LKH + +V++ Y I
Sbjct: 4   FKTHLSLILPLLFMMFAFEFILVTNATLKHYEELVNKDYNI 44


>UniRef50_A5I0Y3 Cluster: Putative membrane protein; n=4;
           Clostridium botulinum|Rep: Putative membrane protein -
           Clostridium botulinum A str. ATCC 3502
          Length = 140

 Score = 33.9 bits (74), Expect = 2.6
 Identities = 15/39 (38%), Positives = 26/39 (66%)
 Frame = -2

Query: 555 LLFASFIVTLFFIV*LESAIKLRIDYYYIVCLNT*LSLM 439
           LLF S I+ + FIV ++  +K +I+++ I+ LN  L L+
Sbjct: 64  LLFISIIIIIIFIVNMKKKLKCKINFFIIILLNIILFLL 102


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 397,464,412
Number of Sequences: 1657284
Number of extensions: 6533075
Number of successful extensions: 9875
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 9653
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9875
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 37071859483
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)