Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0313
         (559 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    24   0.77 
DQ855489-1|ABH88176.1|  122|Tribolium castaneum chemosensory pro...    21   7.2  
AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory recept...    21   7.2  
AJ973444-1|CAJ01491.1|  122|Tribolium castaneum hypothetical pro...    21   7.2  

>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 24.2 bits (50), Expect = 0.77
 Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
 Frame = +1

Query: 10  FYTY*LYYIQLKL*PDVINFALF--LICNAFINT*IKLIFYVCFYF 141
           +Y + L+ + L L   +  F     L C AFI   + L+F +C Y+
Sbjct: 242 YYAFILFTVHLLLLVCIYYFYYMHLLFCCAFIIFTMHLLFLLCIYY 287



 Score = 20.6 bits (41), Expect = 9.5
 Identities = 8/28 (28%), Positives = 15/28 (53%)
 Frame = +1

Query: 58  VINFALFLICNAFINT*IKLIFYVCFYF 141
           +I   ++    AFI   + L+F +C Y+
Sbjct: 108 IILLCVYYFYYAFIIFTVHLLFLLCIYY 135


>DQ855489-1|ABH88176.1|  122|Tribolium castaneum chemosensory
           protein 2 protein.
          Length = 122

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = -2

Query: 252 NNDSDALLHNFNTF*VITYCL 190
           N D DA+LHN   F     CL
Sbjct: 27  NVDIDAILHNKRLFDNYLQCL 47


>AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory receptor
           candidate 51 protein.
          Length = 771

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = -2

Query: 288 NYYRLIIKTIELNN 247
           NYYR++  T+E+ N
Sbjct: 225 NYYRILGDTVEIFN 238


>AJ973444-1|CAJ01491.1|  122|Tribolium castaneum hypothetical
           protein protein.
          Length = 122

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = -2

Query: 252 NNDSDALLHNFNTF*VITYCL 190
           N D DA+LHN   F     CL
Sbjct: 27  NVDIDAILHNKRLFDNYLQCL 47


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 109,356
Number of Sequences: 336
Number of extensions: 2208
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 13681771
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)