Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0313
         (559 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit Apc1|Sc...    27   2.5  
SPBC1271.06c |mug96||sequence orphan|Schizosaccharomyces pombe|c...    25   7.5  
SPAC11E3.09 |pyp3||protein-tyrosine phosphatase Pyp3|Schizosacch...    25   10.0 
SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1 |Sc...    25   10.0 
SPAC7D4.10 |vma13||V-type ATPase subunit H|Schizosaccharomyces p...    25   10.0 

>SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit
           Apc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1458

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 15/40 (37%), Positives = 23/40 (57%)
 Frame = +2

Query: 155 NISLKHIKCIVHRQYVIT*NVLKLCSKASLSLFNSIVFII 274
           N  L HI C+      +T  ++K   K  LSLF+SIV+++
Sbjct: 121 NTDLPHIFCLNDPLDELT--LIKFDGKKILSLFDSIVYVV 158


>SPBC1271.06c |mug96||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 146

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -1

Query: 556 FTLRFVYCHTFFYCLVRVCDQIENR 482
           F +RF   H  F CL+R   + ENR
Sbjct: 36  FIMRFHSYHPMFICLLRDSSRNENR 60


>SPAC11E3.09 |pyp3||protein-tyrosine phosphatase
           Pyp3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 303

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -2

Query: 321 SMILISNYTFTNYYRLIIKTIELNND 244
           S+IL+  YT T+   + ++  ELN D
Sbjct: 152 SVILVKVYTLTSLNEVQVREFELNKD 177


>SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1573

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -2

Query: 339  LHRLTTSMILISNYTFTNYYRL 274
            LHRL  S I + N T  N YR+
Sbjct: 1433 LHRLGVSRIYLLNRTLANSYRV 1454


>SPAC7D4.10 |vma13||V-type ATPase subunit H|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 450

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +1

Query: 25  LYYIQLKL*PDVINFALFLICNAFINT 105
           L  + +K  PDV+NFAL  + +  +N+
Sbjct: 82  LKLLSMKDTPDVVNFALVKLADTLLNS 108


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,820,340
Number of Sequences: 5004
Number of extensions: 32043
Number of successful extensions: 43
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 43
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 233995432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)