Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0313
         (559 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

S78459-1|AAB34403.1|   50|Apis mellifera mast cell-degranulating...    23   2.1  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    22   3.7  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    22   3.7  
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    21   8.4  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    21   8.4  

>S78459-1|AAB34403.1|   50|Apis mellifera mast cell-degranulating
           peptide protein.
          Length = 50

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 13/47 (27%), Positives = 21/47 (44%)
 Frame = +2

Query: 95  LSILK*NLFFMFVFIFSSLRNISLKHIKCIVHRQYVIT*NVLKLCSK 235
           +S+L+   FF+ V + +S        IKC   R  +      K+C K
Sbjct: 2   ISMLRCTFFFLSVILITSYFVTPTMSIKCNCKRHVIKPHICRKICGK 48


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 15/55 (27%), Positives = 26/55 (47%)
 Frame = -1

Query: 550 LRFVYCHTFFYCLVRVCDQIENRLLLYCLS*YIIVFNVVLAKSVNIQSK*SLTIE 386
           L+  Y H  +     +C + E RLL   LS Y  +   V  +S  ++ K  +T++
Sbjct: 35  LQPTYFHHTYIIYESLCGRHEKRLLNELLSSYNTLERPVANESEPLEVKFGITLQ 89


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 15/55 (27%), Positives = 26/55 (47%)
 Frame = -1

Query: 550 LRFVYCHTFFYCLVRVCDQIENRLLLYCLS*YIIVFNVVLAKSVNIQSK*SLTIE 386
           L+  Y H  +     +C + E RLL   LS Y  +   V  +S  ++ K  +T++
Sbjct: 35  LQPTYFHHTYIIYESLCGRHEKRLLNELLSSYNTLERPVANESEPLEVKFGITLQ 89


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 11/53 (20%), Positives = 27/53 (50%)
 Frame = +2

Query: 167 KHIKCIVHRQYVIT*NVLKLCSKASLSLFNSIVFIINL**FVNV*LEINIILV 325
           K ++C + +Q      V  +C+  +  LF  + +  ++  F ++ LE  ++L+
Sbjct: 215 KRVECKMEQQGNYENAVSHICNATNKQLFQLVAWAKHIPHFTSLPLEDQVLLL 267


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 11/53 (20%), Positives = 27/53 (50%)
 Frame = +2

Query: 167 KHIKCIVHRQYVIT*NVLKLCSKASLSLFNSIVFIINL**FVNV*LEINIILV 325
           K ++C + +Q      V  +C+  +  LF  + +  ++  F ++ LE  ++L+
Sbjct: 215 KRVECKMEQQGNYENAVSHICNATNKQLFQLVAWAKHIPHFTSLPLEDQVLLL 267


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 121,447
Number of Sequences: 438
Number of extensions: 2201
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16072521
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)