Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0312
         (749 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A2SMZ7 Cluster: Putative uncharacterized protein; n=1; ...    38   0.35 
UniRef50_Q8I3L6 Cluster: Putative uncharacterized protein PFE124...    36   1.1  
UniRef50_Q6L1T9 Cluster: Diphosphomevalonate decarboxylase; n=1;...    35   2.5  
UniRef50_UPI000049940E Cluster: Ras guanine nucleotide exchange ...    33   5.7  
UniRef50_UPI00004622CC Cluster: COG2003: DNA repair proteins; n=...    33   5.7  
UniRef50_Q8R8P0 Cluster: Pyruvate-formate lyase-activating enzym...    33   7.5  

>UniRef50_A2SMZ7 Cluster: Putative uncharacterized protein; n=1;
           Methylibium petroleiphilum PM1|Rep: Putative
           uncharacterized protein - Methylibium petroleiphilum
           (strain PM1)
          Length = 335

 Score = 37.5 bits (83), Expect = 0.35
 Identities = 17/46 (36%), Positives = 25/46 (54%)
 Frame = +1

Query: 1   RHEILSAEVQRKKNIGPETHETAKLKPSSEDILESLFWNIHGGHFY 138
           + EI SA V R +  GP T E +     + D+L++ FW   GG+ Y
Sbjct: 144 KKEIQSARVSRARRNGPITIEVSASMDEARDLLDTAFWKAAGGNAY 189


>UniRef50_Q8I3L6 Cluster: Putative uncharacterized protein PFE1240w;
           n=1; Plasmodium falciparum 3D7|Rep: Putative
           uncharacterized protein PFE1240w - Plasmodium falciparum
           (isolate 3D7)
          Length = 988

 Score = 35.9 bits (79), Expect = 1.1
 Identities = 13/40 (32%), Positives = 27/40 (67%)
 Frame = -2

Query: 247 NMRNISKLESEIVLSVPIHFTKYHTNITKKKHSLNNYKNV 128
           ++++++ LE+EI+    + F KY  N  K+K  ++NY+N+
Sbjct: 129 DIKDMNSLENEIIEYFKLRFDKYQVNKKKRKEKISNYENM 168


>UniRef50_Q6L1T9 Cluster: Diphosphomevalonate decarboxylase; n=1;
           Picrophilus torridus|Rep: Diphosphomevalonate
           decarboxylase - Picrophilus torridus
          Length = 349

 Score = 34.7 bits (76), Expect = 2.5
 Identities = 24/73 (32%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
 Frame = -2

Query: 343 SIFYFTNKQMDVNDCII*IKTPFT*LQFYLS*NMRNISKLESEIVLSVPIHFTKYHTNIT 164
           SIFY    +    D I  I+  F   +  L  +M+++ +L++ ++ S  I + K++ +I 
Sbjct: 233 SIFYNAWVKSKFFDIIDIIENKFN-TRMMLEYSMKDMYRLQALLISSGYIIYEKHYLDII 291

Query: 163 KK-KHSLNNYKNV 128
           +K + SLNNYKNV
Sbjct: 292 RKLRSSLNNYKNV 304


>UniRef50_UPI000049940E Cluster: Ras guanine nucleotide exchange
            factor; n=1; Entamoeba histolytica HM-1:IMSS|Rep: Ras
            guanine nucleotide exchange factor - Entamoeba
            histolytica HM-1:IMSS
          Length = 1232

 Score = 33.5 bits (73), Expect = 5.7
 Identities = 19/55 (34%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
 Frame = -2

Query: 235  ISKLESEIVLSVPIHFTKYHTNITKKKHSLNNYKNVRHVCSRKDFP-IYLLNLVL 74
            IS+L+  ++ S+P  + K +  + K  H  N+YKN R + S+ + P I L+N  L
Sbjct: 1099 ISRLQ--VMDSIPSKYAKLYHQLKKAVHDKNDYKNYRQIVSKINEPYIPLINAFL 1151


>UniRef50_UPI00004622CC Cluster: COG2003: DNA repair proteins; n=1;
           Rickettsia akari str. Hartford|Rep: COG2003: DNA repair
           proteins - Rickettsia akari str. Hartford
          Length = 167

 Score = 33.5 bits (73), Expect = 5.7
 Identities = 15/41 (36%), Positives = 25/41 (60%)
 Frame = -2

Query: 673 RSRVAWT*LCTNKTPHGTST*KIEEEFILLCNNETNTQHYI 551
           RS  A+T +  + +   TST  +E +F+ + N+E +T HYI
Sbjct: 29  RSTAAYTIVLEDASTGSTSTLHLESQFVKMSNDEIDTPHYI 69


>UniRef50_Q8R8P0 Cluster: Pyruvate-formate lyase-activating enzyme;
           n=6; Clostridia|Rep: Pyruvate-formate lyase-activating
           enzyme - Thermoanaerobacter tengcongensis
          Length = 328

 Score = 33.1 bits (72), Expect = 7.5
 Identities = 16/58 (27%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
 Frame = -2

Query: 244 MRNISKLESEIVLSVPIHFTKY--HTNITKKKHSLNNYKNVRHVCSRKDFPIYLLNLV 77
           +RN+SK  S+I  ++P+HF++Y  H  +TK    ++  +  R +       +Y+ N++
Sbjct: 227 IRNLSKWLSQIDKNIPLHFSRYFPHYKLTKPPTPISTLEKARDIAKEYLNFVYVGNVL 284


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 698,069,821
Number of Sequences: 1657284
Number of extensions: 13516251
Number of successful extensions: 28357
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 27268
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28352
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 61734884250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)