Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0312
         (749 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPB21E7.09 ||SPAPB21E7.09, SPAPB21E7.09|L-asparaginase |Schizo...    30   0.40 
SPAC186.03 |||L-asparaginase|Schizosaccharomyces pombe|chr 1|||M...    30   0.40 
SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3 B...    26   6.6  
SPBC409.09c |mis13|cnl1|kinetochore protein Mis13|Schizosaccharo...    25   8.7  

>SPBPB21E7.09 ||SPAPB21E7.09, SPAPB21E7.09|L-asparaginase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 360

 Score = 29.9 bits (64), Expect = 0.40
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -1

Query: 131 CPPCMFQKRLSNISSELGFNFAVSCVS 51
           C P +FQKR SN+S  + FN ++  V+
Sbjct: 16  CQPLLFQKRSSNVSDFISFNASLPNVT 42


>SPAC186.03 |||L-asparaginase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 360

 Score = 29.9 bits (64), Expect = 0.40
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = -1

Query: 131 CPPCMFQKRLSNISSELGFNFAVSCVS 51
           C P +FQKR SNIS  + FN ++  V+
Sbjct: 16  CQPFLFQKRSSNISDFISFNASLPNVT 42


>SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3
           Brl1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 692

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
 Frame = -1

Query: 188 HKISH*HHKEEAQ-FK*L*KCPPCMFQKRLSNISSELGFNFAVSCV 54
           H I+  +  +EAQ +K + KC  C F    S +    G  F  +C+
Sbjct: 619 HLINQAYETQEAQVYKGMLKCSVCNFSNWKSKLIPNCGHAFCSNCM 664


>SPBC409.09c |mis13|cnl1|kinetochore protein
           Mis13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 329

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +1

Query: 49  PETHETAKLKPSSEDILESLFWNIHGGH 132
           PE    +KLKP    +L+ L  NIH  H
Sbjct: 245 PELPNISKLKPKFHTLLDMLAENIHTLH 272


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,108,424
Number of Sequences: 5004
Number of extensions: 64748
Number of successful extensions: 151
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)