Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0312
         (749 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0151 - 5035572-5035954,5036309-5036324,5036420-5037040           29   3.0  
01_01_0847 - 6611378-6611554,6612181-6612366,6612547-6612658,661...    29   5.2  

>09_02_0151 - 5035572-5035954,5036309-5036324,5036420-5037040
          Length = 339

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 3/68 (4%)
 Frame = -3

Query: 375 CCLFAWYSLCILYFILLINKWMLMIA*FK*KPPLPSYNFIYLKI*E-TFQS*SLKLY--L 205
           CC+  W   C L+ I+         A F  KP  PSY+   + + +  F S  L LY  L
Sbjct: 21  CCVLCW-CCCFLFLIVAALAGAAAYALFLYKPKAPSYSVSNMSVSQFDFNSNDLTLYTKL 79

Query: 204 VSQFTSQN 181
           V+   ++N
Sbjct: 80  VATVRAEN 87


>01_01_0847 -
           6611378-6611554,6612181-6612366,6612547-6612658,
           6612748-6612784,6612866-6612905
          Length = 183

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -3

Query: 375 CCLFAWYSLCILYFILLINKWML 307
           C L+ WY L + Y ++L  K++L
Sbjct: 53  CLLYTWYGLPVAYLMILFQKFVL 75


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,951,441
Number of Sequences: 37544
Number of extensions: 341854
Number of successful extensions: 570
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 560
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 570
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)