Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0312
         (749 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_36814| Best HMM Match : Ion_trans_2 (HMM E-Value=2.1e-21)           29   5.3  
SB_54878| Best HMM Match : PAP_assoc (HMM E-Value=5.4e-18)             28   7.0  
SB_59799| Best HMM Match : 7tm_1 (HMM E-Value=5.3e-09)                 28   9.3  

>SB_36814| Best HMM Match : Ion_trans_2 (HMM E-Value=2.1e-21)
          Length = 436

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = +2

Query: 320 FISKIKYRIHKEYHANKQH 376
           F+++I + +HKEYH  K+H
Sbjct: 278 FVTEIIHALHKEYHRRKRH 296


>SB_54878| Best HMM Match : PAP_assoc (HMM E-Value=5.4e-18)
          Length = 1425

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +1

Query: 556 SVECLFHCYTII*IPLLFFRCL-FHVESCWYTVKSKPLCF 672
           S++CL H      +  L F C+ F++E C+ T+K  P  F
Sbjct: 67  SLDCLDHPKAQFALCFLKFYCVEFNIEECYVTIKQGPSNF 106


>SB_59799| Best HMM Match : 7tm_1 (HMM E-Value=5.3e-09)
          Length = 323

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +3

Query: 408 LAAEHKKHIKWKKSNYFCVLLFVSD 482
           LA  H+K  + KKSNYF   L ++D
Sbjct: 35  LAVFHQKTFRLKKSNYFLTSLTIAD 59


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,014,525
Number of Sequences: 59808
Number of extensions: 454507
Number of successful extensions: 819
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 754
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 818
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2034222073
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)