Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0312
         (749 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    23   2.3  
AF393496-1|AAL60421.1|  146|Apis mellifera odorant binding prote...    22   7.1  
AF339140-1|AAK01304.1|  120|Apis mellifera odorant binding prote...    22   7.1  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    21   9.3  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    21   9.3  

>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -3

Query: 690 IFMLKAEAEWLGLDCVPTRL 631
           + ML   + WLGLD +P R+
Sbjct: 213 VVMLSWFSFWLGLDAIPGRV 232


>AF393496-1|AAL60421.1|  146|Apis mellifera odorant binding protein
           ASP6 protein.
          Length = 146

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 11/19 (57%), Positives = 14/19 (73%), Gaps = 1/19 (5%)
 Frame = -2

Query: 136 KNVRHVCSRK-DFPIYLLN 83
           KN+R VCS+K D P  LL+
Sbjct: 37  KNLRKVCSKKNDTPKELLD 55


>AF339140-1|AAK01304.1|  120|Apis mellifera odorant binding protein
           protein.
          Length = 120

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 11/19 (57%), Positives = 14/19 (73%), Gaps = 1/19 (5%)
 Frame = -2

Query: 136 KNVRHVCSRK-DFPIYLLN 83
           KN+R VCS+K D P  LL+
Sbjct: 11  KNLRKVCSKKNDTPKELLD 29


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -2

Query: 607 IEEEFILLCNNETNTQHY 554
           +E+ F   CN++TNT  Y
Sbjct: 211 LEKFFTDYCNSKTNTGEY 228


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -2

Query: 607 IEEEFILLCNNETNTQHY 554
           +E+ F   CN++TNT  Y
Sbjct: 211 LEKFFTDYCNSKTNTGEY 228


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 205,410
Number of Sequences: 438
Number of extensions: 4231
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23510295
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)