Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0311
(732 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_O75306 Cluster: NADH dehydrogenase [ubiquinone] iron-su... 230 3e-59
UniRef50_P93306 Cluster: NADH-ubiquinone oxidoreductase 49 kDa s... 217 2e-55
UniRef50_Q4P4N9 Cluster: Putative uncharacterized protein; n=1; ... 184 2e-45
UniRef50_A7DLV5 Cluster: NADH dehydrogenase; n=1; Methylobacteri... 183 3e-45
UniRef50_P15689 Cluster: NADH-ubiquinone oxidoreductase 49 kDa s... 177 3e-43
UniRef50_Q9PGJ2 Cluster: NADH-ubiquinone oxidoreductase, NQO4 su... 176 5e-43
UniRef50_Q5DUX5 Cluster: NADH-ubiquinone oxidoreductase 49 kDa s... 153 3e-36
UniRef50_A3ERJ4 Cluster: NADH ubiquinone oxidoreductase subunit ... 140 3e-32
UniRef50_Q67KN9 Cluster: NADH dehydrogenase I subunit D; n=19; F... 139 6e-32
UniRef50_A6FCN3 Cluster: NuoD2 NADH I CHAIN D; n=1; Moritella sp... 137 2e-31
UniRef50_Q56220 Cluster: NADH-quinone oxidoreductase subunit 4; ... 137 2e-31
UniRef50_P56908 Cluster: NADH-quinone oxidoreductase subunit D 2... 137 3e-31
UniRef50_Q1IS59 Cluster: NADH dehydrogenase I, D subunit; n=2; A... 135 1e-30
UniRef50_P21301 Cluster: NADH-ubiquinone oxidoreductase 49 kDa s... 130 3e-29
UniRef50_Q9PM99 Cluster: NADH-quinone oxidoreductase subunit D; ... 128 1e-28
UniRef50_Q1AVI6 Cluster: NADH dehydrogenase; n=1; Rubrobacter xy... 128 1e-28
UniRef50_Q2S5J0 Cluster: NADH dehydrogenase I, D subunit; n=4; B... 128 2e-28
UniRef50_A7CUG2 Cluster: NADH dehydrogenase I, D subunit; n=1; O... 127 3e-28
UniRef50_A3ZL03 Cluster: NADH dehydrogenase; n=1; Blastopirellul... 124 2e-27
UniRef50_A4XCQ7 Cluster: NADH dehydrogenase; n=5; Actinomycetale... 124 2e-27
UniRef50_Q8KEC0 Cluster: NADH dehydrogenase I, 49 kDa subunit; n... 124 3e-27
UniRef50_O66826 Cluster: NADH dehydrogenase I chain D; n=4; Aqui... 124 3e-27
UniRef50_Q3ZXR8 Cluster: Proton-translocating NADH-quinone oxido... 123 4e-27
UniRef50_Q67P19 Cluster: NADH dehydrogenase I subunit D; n=1; Sy... 122 9e-27
UniRef50_Q746S4 Cluster: NADH dehydrogenase I, B/C/D subunits; n... 122 1e-26
UniRef50_Q6MDR3 Cluster: Putative NADH-ubiquinone oxidoreductase... 122 1e-26
UniRef50_Q979M3 Cluster: NADH dehydrogenase I chain D; n=6; Ther... 121 2e-26
UniRef50_P65570 Cluster: NADH-quinone oxidoreductase subunit D; ... 119 6e-26
UniRef50_A7H9U8 Cluster: NADH dehydrogenase; n=2; Anaeromyxobact... 118 1e-25
UniRef50_P0A1Y6 Cluster: NADH-quinone oxidoreductase subunit C/D... 116 5e-25
UniRef50_Q6MIR5 Cluster: NADH dehydrogenase I,D subunit; n=1; Bd... 116 8e-25
UniRef50_A5UXK3 Cluster: NADH dehydrogenase; n=3; Chloroflexi (c... 114 2e-24
UniRef50_Q190M8 Cluster: NADH-ubiquinone oxidoreductase, chain 4... 113 3e-24
UniRef50_P56753 Cluster: NAD(P)H-quinone oxidoreductase chain H,... 112 7e-24
UniRef50_A7H9V5 Cluster: NADH dehydrogenase; n=4; Cystobacterine... 107 3e-22
UniRef50_Q8A0F6 Cluster: NADH dehydrogenase I, chain D; n=8; Bac... 105 8e-22
UniRef50_Q2C5T4 Cluster: NADH dehydrogenase I, B/C/D subunits; n... 102 8e-21
UniRef50_A1ALP2 Cluster: NADH dehydrogenase; n=1; Pelobacter pro... 102 8e-21
UniRef50_A0RMD1 Cluster: NADH-quinone oxidoreductase chain c/d; ... 100 3e-20
UniRef50_Q9P9G0 Cluster: F420H2 dehydrogenase subunit FpoD; n=6;... 98 2e-19
UniRef50_Q8F7Q2 Cluster: NADH dehydrogenase I, D subunit; n=8; B... 96 9e-19
UniRef50_Q1K3R4 Cluster: NADH dehydrogenase; n=4; Deltaproteobac... 96 9e-19
UniRef50_A2Q588 Cluster: NADH-ubiquinone oxidoreductase, chain 4... 85 2e-15
UniRef50_UPI00015BB164 Cluster: NADH-ubiquinone oxidoreductase, ... 83 9e-15
UniRef50_Q9HRL9 Cluster: NADH dehydrogenase/oxidoreductase; n=6;... 83 9e-15
UniRef50_Q9X0U3 Cluster: NADH dehydrogenase, 49 kDa subunit, put... 77 6e-13
UniRef50_Q8ZWW9 Cluster: NADH-ubiquinone oxidoreductase subunit;... 76 8e-13
UniRef50_A0RY68 Cluster: NADH-ubiquinone oxidoreductase, subunit... 73 7e-12
UniRef50_Q980H3 Cluster: NADH dehydrogenase subunit D; n=2; Sulf... 71 2e-11
UniRef50_A6Q8J5 Cluster: NADH-quinone oxidoreductase, chain D; n... 71 3e-11
UniRef50_Q9YC29 Cluster: NuoD homolog; n=4; Thermoprotei|Rep: Nu... 71 3e-11
UniRef50_A0L9R4 Cluster: NADH dehydrogenase; n=2; Bacteria|Rep: ... 69 9e-11
UniRef50_A1RZ50 Cluster: NADH dehydrogenase; n=1; Thermofilum pe... 69 1e-10
UniRef50_Q0W3I1 Cluster: Ech hydrogenase, subunit E; n=1; uncult... 68 2e-10
UniRef50_A7C1S4 Cluster: NADH-ubiquinone oxidoreductase subunit;... 64 4e-09
UniRef50_A1RZ40 Cluster: NADH-ubiquinone oxidoreductase, chain 4... 64 4e-09
UniRef50_Q9V0S5 Cluster: NuoD NADH dehydrognease I, subunit D; n... 61 3e-08
UniRef50_UPI000155B933 Cluster: PREDICTED: similar to NADH dehyd... 55 2e-06
UniRef50_Q8TY43 Cluster: Ni,Fe-hydrogenase III large subunit; n=... 54 5e-06
UniRef50_O28445 Cluster: F420H2:quinone oxidoreductase, 45 kDa s... 54 5e-06
UniRef50_A3DM94 Cluster: NADH-ubiquinone oxidoreductase, chain 4... 54 5e-06
UniRef50_A7I491 Cluster: NADH dehydrogenase; n=2; cellular organ... 53 6e-06
UniRef50_Q8RDB4 Cluster: NADH:ubiquinone oxidoreductase 49 kD su... 51 3e-05
UniRef50_Q57935 Cluster: Uncharacterized protein MJ0515; n=9; Eu... 51 3e-05
UniRef50_A1AUU6 Cluster: NADH dehydrogenase (Ubiquinone) precurs... 50 6e-05
UniRef50_A3DKH4 Cluster: NADH-ubiquinone oxidoreductase, chain 4... 50 6e-05
UniRef50_Q6AB32 Cluster: Putative NADH dehydrogenase; n=1; Propi... 47 4e-04
UniRef50_P16431 Cluster: Formate hydrogenlyase subunit 5 precurs... 46 7e-04
UniRef50_Q8U0Z6 Cluster: Mbh12 membrane bound hydrogenase alpha;... 46 0.001
UniRef50_P77329 Cluster: Hydrogenase-4 component G; n=19; Bacter... 45 0.002
UniRef50_P31895 Cluster: Carbon monoxide-induced hydrogenase; n=... 44 0.003
UniRef50_A6DBV4 Cluster: Ech hydrogenase, subunit EchE, putative... 44 0.004
UniRef50_Q2FTW4 Cluster: NADH dehydrogenase; n=2; Methanomicrobi... 44 0.004
UniRef50_Q4X2T6 Cluster: Putative uncharacterized protein; n=1; ... 43 0.007
UniRef50_A1RWL3 Cluster: NADH dehydrogenase (Ubiquinone), 30 kDa... 43 0.009
UniRef50_Q0W6T4 Cluster: [NiFe]-hydrogenase, large subunit; n=1;... 42 0.016
UniRef50_A3DNE9 Cluster: NADH dehydrogenase (Ubiquinone), 30 kDa... 42 0.021
UniRef50_A3CUR5 Cluster: NADH dehydrogenase; n=3; Methanomicrobi... 42 0.021
UniRef50_Q9UYN4 Cluster: Hydrogenase 4, component G or formate h... 40 0.063
UniRef50_A1ASR5 Cluster: NADH dehydrogenase (Ubiquinone), 30 kDa... 39 0.11
UniRef50_Q24ST8 Cluster: Formate hydrogenlyase subunit 5; n=2; D... 38 0.33
UniRef50_Q0W2B9 Cluster: Hydrogenase, large subunit-like protein... 38 0.33
UniRef50_Q0LPD5 Cluster: NADH-ubiquinone oxidoreductase, chain 4... 37 0.59
UniRef50_Q0BPG8 Cluster: Formate hydrogenlyase subunit 5; n=1; G... 36 0.77
UniRef50_Q1PZL4 Cluster: Similar to membrane-bound [NiFe]-hydrog... 35 1.8
UniRef50_A0UXP1 Cluster: NADH dehydrogenase; n=1; Clostridium ce... 35 2.4
UniRef50_Q6IG62 Cluster: HDC07157; n=1; Drosophila melanogaster|... 34 3.1
UniRef50_Q4DZG8 Cluster: Putative uncharacterized protein; n=2; ... 33 5.5
UniRef50_Q10884 Cluster: POSSIBLE FORMATE HYDROGENASE HYCE; n=10... 33 7.2
UniRef50_Q3WCX1 Cluster: Cell divisionFtsK/SpoIIIE protein; n=1;... 33 7.2
UniRef50_Q05V81 Cluster: ABC-type sugar transport system peripla... 33 7.2
UniRef50_Q09CD1 Cluster: Tetratricopeptide repeat domain protein... 33 9.5
>UniRef50_O75306 Cluster: NADH dehydrogenase [ubiquinone]
iron-sulfur protein 2, mitochondrial precursor; n=305;
cellular organisms|Rep: NADH dehydrogenase [ubiquinone]
iron-sulfur protein 2, mitochondrial precursor - Homo
sapiens (Human)
Length = 463
Score = 230 bits (562), Expect = 3e-59
Identities = 114/152 (75%), Positives = 122/152 (80%), Gaps = 3/152 (1%)
Frame = +2
Query: 257 VRNMILNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYF 436
V+N+ LNFGPQHPAAHGVLRLV+EL GE VR DPHIGLLHRGTEKLIEYKTY QALPYF
Sbjct: 77 VKNITLNFGPQHPAAHGVLRLVMELSGEMVRKCDPHIGLLHRGTEKLIEYKTYLQALPYF 136
Query: 437 DRLDYVSMMCNEQCYSLAVEKLLNSMFLCGPSTSELCLRR*PAT---EHIMAVGTHALDV 607
DRLDYVSMMCNEQ YSLAVEKLLN P + + T HIMAV THALD+
Sbjct: 137 DRLDYVSMMCNEQAYSLAVEKLLN--IRPPPRAQWIRVLFGEITRLLNHIMAVTTHALDL 194
Query: 608 GALTPFFWLFEEREKMMEFYERVSGARMHALH 703
GA+TPFFWLFEEREKM EFYERVSGARMHA +
Sbjct: 195 GAMTPFFWLFEEREKMFEFYERVSGARMHAAY 226
Score = 43.6 bits (98), Expect = 0.005
Identities = 17/47 (36%), Positives = 26/47 (55%)
Frame = +3
Query: 111 VNSQRDGHRWFPDPDFVKQFEGPVMYPDESTKSLKPVPYNSIIKPAE 251
+ R +W PD ++ +QF G VMYP + T KP P+N + P +
Sbjct: 28 IQPSRGVRQWQPDVEWAQQFGGAVMYPSKETAHWKPPPWNDVDPPKD 74
>UniRef50_P93306 Cluster: NADH-ubiquinone oxidoreductase 49 kDa
subunit; n=37; cellular organisms|Rep: NADH-ubiquinone
oxidoreductase 49 kDa subunit - Arabidopsis thaliana
(Mouse-ear cress)
Length = 394
Score = 217 bits (530), Expect = 2e-55
Identities = 104/153 (67%), Positives = 119/153 (77%), Gaps = 1/153 (0%)
Frame = +2
Query: 242 TGRKEVRNMILNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQ 421
T +++++N LNFGPQHPAAHGVLRLVLE++GE V A+PHIGLLHRGTEKLIEYKTY Q
Sbjct: 3 TRKRQIKNFTLNFGPQHPAAHGVLRLVLEMNGEVVERAEPHIGLLHRGTEKLIEYKTYLQ 62
Query: 422 ALPYFDRLDYVSMMCNEQCYSLAVEKLLN-SMFLCGPSTSELCLRR*PATEHIMAVGTHA 598
ALPYFDR DYVSMM E YSLAVEKLLN + L L H++A+ THA
Sbjct: 63 ALPYFDRSDYVSMMAQEHAYSLAVEKLLNCEVPLRAQYIRVLFCEITRILNHLLALTTHA 122
Query: 599 LDVGALTPFFWLFEEREKMMEFYERVSGARMHA 697
+DVGALTPF W FEEREK++EFYERVSGARMHA
Sbjct: 123 MDVGALTPFLWAFEEREKLLEFYERVSGARMHA 155
>UniRef50_Q4P4N9 Cluster: Putative uncharacterized protein; n=1;
Ustilago maydis|Rep: Putative uncharacterized protein -
Ustilago maydis (Smut fungus)
Length = 498
Score = 184 bits (449), Expect = 2e-45
Identities = 101/182 (55%), Positives = 114/182 (62%), Gaps = 27/182 (14%)
Frame = +2
Query: 251 KEVRNMILNFGPQHPAAHGVLRLVLELDGETVRAAD------------------------ 358
+ +R+ +NFGPQHPAAHGVLRL+LEL+GE + D
Sbjct: 84 RSLRHFTVNFGPQHPAAHGVLRLILELNGEEILRTDLAICKANIADSIQSCLFWPSGVCI 143
Query: 359 --PHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNSMFLCGPS 532
PH+GLLHRGTEKLIEYKTYTQALPYFDRLDYVSMM NE CYS AVEKLLN
Sbjct: 144 LQPHVGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMTNELCYSRAVEKLLNIEVPERAK 203
Query: 533 TSELCLRR*P-ATEHIMAVGTHALDVGALTPFFWLFEEREKMMEFYERVSGARMHALHQT 709
H MAV +H +DVG LTPF W FEEREK+MEFYERVSGAR+HA +
Sbjct: 204 WIRTMFGEITRILNHCMAVLSHVMDVGGLTPFLWAFEEREKLMEFYERVSGARLHAAYVR 263
Query: 710 RG 715
G
Sbjct: 264 PG 265
>UniRef50_A7DLV5 Cluster: NADH dehydrogenase; n=1; Methylobacterium
extorquens PA1|Rep: NADH dehydrogenase -
Methylobacterium extorquens PA1
Length = 447
Score = 183 bits (446), Expect = 3e-45
Identities = 91/148 (61%), Positives = 104/148 (70%), Gaps = 1/148 (0%)
Frame = +2
Query: 257 VRNMILNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYF 436
+RN +NFGPQHPAAHGVLRLVLELDGE V DPHIGLLHRGTEKLIE+KTY QA PYF
Sbjct: 27 IRNFSINFGPQHPAAHGVLRLVLELDGEVVERVDPHIGLLHRGTEKLIEHKTYLQATPYF 86
Query: 437 DRLDYVSMMCNEQCYSLAVEKLLN-SMFLCGPSTSELCLRR*PATEHIMAVGTHALDVGA 613
DRLDYV+ M E + LA+E+L + L H++ V T A+DVGA
Sbjct: 87 DRLDYVAPMNQEHAFCLAIERLAGIEVPRRAQLIRTLFCEIGRLLSHLLNVTTQAMDVGA 146
Query: 614 LTPFFWLFEEREKMMEFYERVSGARMHA 697
LTP W FEEREK+M FYER SGAR+HA
Sbjct: 147 LTPPLWGFEEREKLMIFYERASGARLHA 174
>UniRef50_P15689 Cluster: NADH-ubiquinone oxidoreductase 49 kDa
subunit; n=9; Intramacronucleata|Rep: NADH-ubiquinone
oxidoreductase 49 kDa subunit - Paramecium tetraurelia
Length = 400
Score = 177 bits (430), Expect = 3e-43
Identities = 85/152 (55%), Positives = 109/152 (71%), Gaps = 5/152 (3%)
Frame = +2
Query: 257 VRNMILNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYF 436
++ + +NFGPQHPAAHGVLRL+L+L+GE V D HIGLLHRG+EKL+E K Y Q++PYF
Sbjct: 1 MKAICVNFGPQHPAAHGVLRLILQLNGEVVEKMDIHIGLLHRGSEKLMETKPYLQSMPYF 60
Query: 437 DRLDYVSMMCNEQCYSLAVEKLLNSM-----FLCGPSTSELCLRR*PATEHIMAVGTHAL 601
DRLDYVSMM E Y LA+E LLN+ F+ + + R H++A+ HAL
Sbjct: 61 DRLDYVSMMVQEHAYCLAIEALLNTTNYTANFVLVRTMFDELTR---ILNHMLAIACHAL 117
Query: 602 DVGALTPFFWLFEEREKMMEFYERVSGARMHA 697
D+G+++ FW FEEREK+MEFYERV G RMHA
Sbjct: 118 DIGSMSSIFWAFEEREKIMEFYERVCGRRMHA 149
>UniRef50_Q9PGJ2 Cluster: NADH-ubiquinone oxidoreductase, NQO4
subunit; n=105; Proteobacteria|Rep: NADH-ubiquinone
oxidoreductase, NQO4 subunit - Xylella fastidiosa
Length = 435
Score = 176 bits (428), Expect = 5e-43
Identities = 86/167 (51%), Positives = 114/167 (68%), Gaps = 6/167 (3%)
Frame = +2
Query: 248 RKEVRNMILNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQAL 427
++E+RN +NFGPQHPAAHGVLRL+LE+DGETV ADPHIGLLHRGTEKL E K + Q++
Sbjct: 19 KQEIRNYTMNFGPQHPAAHGVLRLILEMDGETVVRADPHIGLLHRGTEKLAESKPFNQSI 78
Query: 428 PYFDRLDYVSMMCNEQCYSLAVEKLLNSMFLCGPSTSELCLRR*P----ATEHIMAVGTH 595
Y DRLDYVSMMCNE Y A+E L+ + P ++ H+M +G++
Sbjct: 79 GYMDRLDYVSMMCNEHAYVRAIETLIG---IQAPERAQYIRTMFDEITRILNHLMWLGSN 135
Query: 596 ALDVGALTPFFWLFEEREKMMEFYERVSGARMHALHQTRG--FADMP 730
ALD+GA+ + F ERE++M+ YE +SGARMHA + G + D+P
Sbjct: 136 ALDLGAMAVMLYAFREREELMDVYEAISGARMHAAYYRPGGVYRDLP 182
>UniRef50_Q5DUX5 Cluster: NADH-ubiquinone oxidoreductase 49 kDa
subunit; n=3; Nyctotherus ovalis|Rep: NADH-ubiquinone
oxidoreductase 49 kDa subunit - Nyctotherus ovalis
Length = 412
Score = 153 bits (372), Expect = 3e-36
Identities = 72/147 (48%), Positives = 95/147 (64%), Gaps = 2/147 (1%)
Frame = +2
Query: 260 RNMILNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFD 439
R +ILNFGPQHPA+HGVLRLV+ + GE V DPHIG LHRGTE+L+E +Y A + D
Sbjct: 25 RILILNFGPQHPASHGVLRLVIVIIGEVVTKLDPHIGFLHRGTERLVEEHSYMNAAVFMD 84
Query: 440 RLDYVSMMCNEQCYSLAVEKLLNSMFLC--GPSTSELCLRR*PATEHIMAVGTHALDVGA 613
RLDY +++ Y LAVE+ L LC + H++++ THALD+G
Sbjct: 85 RLDYTTVLTQTHAYCLAVEQALAKSRLCIRTQLLRTIFDELSRILNHLLSIATHALDIGT 144
Query: 614 LTPFFWLFEEREKMMEFYERVSGARMH 694
+ FW FE+RE++ME YE +SGARMH
Sbjct: 145 MAMLFWAFEDRERIMELYEYISGARMH 171
>UniRef50_A3ERJ4 Cluster: NADH ubiquinone oxidoreductase subunit 7;
n=2; Leptospirillum|Rep: NADH ubiquinone oxidoreductase
subunit 7 - Leptospirillum sp. Group II UBA
Length = 423
Score = 140 bits (339), Expect = 3e-32
Identities = 72/160 (45%), Positives = 101/160 (63%), Gaps = 6/160 (3%)
Frame = +2
Query: 269 ILNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLD 448
+LN GPQHP+ HGVLR++LELDGE ++ + P +G LHRGTEK+ EY+TY Q +P DRLD
Sbjct: 41 LLNMGPQHPSTHGVLRVLLELDGERIKRSVPDLGYLHRGTEKIAEYRTYNQIIPLTDRLD 100
Query: 449 YVSMMCNEQCYSLAVEKLLNSMFLCGPSTSE----LCLRR*PATEHIMAVGTHALDVGAL 616
YVS M N + VEKLL L P +E + H+ +GT ALD+GA+
Sbjct: 101 YVSAMANNYAFVRTVEKLLQ---LKVPDRAEFVRTIVAEVQRIVNHLFWLGTQALDIGAM 157
Query: 617 TPFFWLFEEREKMMEFYERVSGARMHALHQTRG--FADMP 730
+ FF+ F ERE++++ +E + GAR+ + G +DMP
Sbjct: 158 SVFFYTFREREELLDIFEILCGARLTTNYYRVGGVESDMP 197
>UniRef50_Q67KN9 Cluster: NADH dehydrogenase I subunit D; n=19;
Firmicutes|Rep: NADH dehydrogenase I subunit D -
Symbiobacterium thermophilum
Length = 384
Score = 139 bits (337), Expect = 6e-32
Identities = 66/151 (43%), Positives = 96/151 (63%), Gaps = 4/151 (2%)
Frame = +2
Query: 251 KEVRNMILNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALP 430
+ + +++N GPQHP+ HGVLRL+++LDGE V +P IG LHR EKL E KTY Q +P
Sbjct: 4 ERTQELLVNMGPQHPSTHGVLRLMIKLDGEQVTWCEPDIGYLHRCFEKLAEQKTYPQVIP 63
Query: 431 YFDRLDYVSMMCNEQCYSLAVEKLLNSMFLCGPSTSE----LCLRR*PATEHIMAVGTHA 598
+ DR DY++ M NE CY AVEKL P ++ + T H++A+G+ A
Sbjct: 64 FTDRTDYLAAMLNELCYVEAVEKLFGDAIQV-PERAQYIRVMLAELQRITSHLLALGSMA 122
Query: 599 LDVGALTPFFWLFEEREKMMEFYERVSGARM 691
+D+GA TPF + + +REK+ +ER++G RM
Sbjct: 123 MDLGATTPFLYCWRDREKLYSLFERITGGRM 153
>UniRef50_A6FCN3 Cluster: NuoD2 NADH I CHAIN D; n=1; Moritella sp.
PE36|Rep: NuoD2 NADH I CHAIN D - Moritella sp. PE36
Length = 405
Score = 137 bits (332), Expect = 2e-31
Identities = 69/149 (46%), Positives = 93/149 (62%), Gaps = 4/149 (2%)
Frame = +2
Query: 260 RNMILNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFD 439
R +++N GPQHP+ HGVLRL+L++DGE V+ +PHIGLLHRGTEKL E TYTQ P D
Sbjct: 18 REVLMNLGPQHPSTHGVLRLLLQMDGEIVKRIEPHIGLLHRGTEKLCESFTYTQIFPLTD 77
Query: 440 RLDYVSMMCNEQCYSLAVEKLLNSMFLCGPSTSE----LCLRR*PATEHIMAVGTHALDV 607
RLDY+ N Y+LAVE LL + P ++ L + H++ G +DV
Sbjct: 78 RLDYLCQPSNNLGYALAVEALLG---IKAPERAQYIRVLMAELSRISGHLLITGALPMDV 134
Query: 608 GALTPFFWLFEEREKMMEFYERVSGARMH 694
GA+T + +RE +M+ E +SGARMH
Sbjct: 135 GAITTLLYTMRDREMIMDLMEMISGARMH 163
>UniRef50_Q56220 Cluster: NADH-quinone oxidoreductase subunit 4;
n=10; Bacteria|Rep: NADH-quinone oxidoreductase subunit
4 - Thermus thermophilus (strain HB8 / ATCC 27634 / DSM
579)
Length = 409
Score = 137 bits (332), Expect = 2e-31
Identities = 69/151 (45%), Positives = 95/151 (62%), Gaps = 3/151 (1%)
Frame = +2
Query: 251 KEVRN--MILNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQA 424
KE+R M LN GPQHP+ HGVLRL++ L GE V PHIG LH G EK +E++TY Q
Sbjct: 19 KELRTEVMTLNVGPQHPSTHGVLRLMVTLSGEEVLEVVPHIGYLHTGFEKTMEHRTYLQN 78
Query: 425 LPYFDRLDYVSMMCNEQCYSLAVEKLLNSMFLCGPSTSELCLRR*P-ATEHIMAVGTHAL 601
+ Y R+DY+ ++ Y+LAVEKLL ++ T + L H++ +GT L
Sbjct: 79 ITYTPRMDYLHSFAHDLAYALAVEKLLGAVVPPRAETIRVILNELSRLASHLVFLGTGLL 138
Query: 602 DVGALTPFFWLFEEREKMMEFYERVSGARMH 694
D+GALTPFF+ F ERE +++ +E V+G R H
Sbjct: 139 DLGALTPFFYAFRERETILDLFEWVTGQRFH 169
>UniRef50_P56908 Cluster: NADH-quinone oxidoreductase subunit D 2;
n=4; Bacteria|Rep: NADH-quinone oxidoreductase subunit D
2 - Rhizobium meliloti (Sinorhizobium meliloti)
Length = 404
Score = 137 bits (331), Expect = 3e-31
Identities = 68/146 (46%), Positives = 89/146 (60%), Gaps = 1/146 (0%)
Frame = +2
Query: 260 RNMILNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFD 439
+ ++LN GPQHP+ HGVLRLVL+LDGE V DPHIG LHRGTEKL E TYTQ P D
Sbjct: 18 KEVLLNLGPQHPSTHGVLRLVLQLDGEYVERVDPHIGYLHRGTEKLAESFTYTQIFPLTD 77
Query: 440 RLDYVSMMCNEQCYSLAVEKLLN-SMFLCGPSTSELCLRR*PATEHIMAVGTHALDVGAL 616
RLDY+ N ++LAVEKLL + + + H++ G +D+GA+
Sbjct: 78 RLDYLCPPSNNLAFALAVEKLLGIEAPIRAQYIRVMMAELARISGHLLITGALPMDLGAM 137
Query: 617 TPFFWLFEEREKMMEFYERVSGARMH 694
T + ERE +M+ E ++GARMH
Sbjct: 138 TALLYAMREREMIMDLLEMITGARMH 163
>UniRef50_Q1IS59 Cluster: NADH dehydrogenase I, D subunit; n=2;
Acidobacteria|Rep: NADH dehydrogenase I, D subunit -
Acidobacteria bacterium (strain Ellin345)
Length = 381
Score = 135 bits (326), Expect = 1e-30
Identities = 65/143 (45%), Positives = 93/143 (65%), Gaps = 1/143 (0%)
Frame = +2
Query: 266 MILNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRL 445
++LN GPQHP+ HGVLR++L+LDGE V + IG LHRG EK+ E +TY Q PY DR+
Sbjct: 23 LVLNMGPQHPSTHGVLRVILKLDGERVLGTECVIGYLHRGVEKIAENRTYVQFNPYVDRM 82
Query: 446 DYVSMMCNEQCYSLAVEKLLNSMFLCGPSTSELCLRR-*PATEHIMAVGTHALDVGALTP 622
DYV+ + N Y AVEKL++ + L H++ +GTHALD+GALTP
Sbjct: 83 DYVAAVSNGLGYCEAVEKLIDVQAPPRAQFLRVILTELNRLASHMVWLGTHALDIGALTP 142
Query: 623 FFWLFEEREKMMEFYERVSGARM 691
F+ F +RE++++ +E+ GAR+
Sbjct: 143 LFYTFRDREEVLKIFEKYCGARL 165
>UniRef50_P21301 Cluster: NADH-ubiquinone oxidoreductase 49 kDa
subunit homolog; n=3; Trypanosomatidae|Rep:
NADH-ubiquinone oxidoreductase 49 kDa subunit homolog -
Trypanosoma brucei brucei
Length = 386
Score = 130 bits (315), Expect = 3e-29
Identities = 66/140 (47%), Positives = 83/140 (59%), Gaps = 1/140 (0%)
Frame = +2
Query: 278 FGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVS 457
FGPQHPAAHGVL +L GE + D IG LHRGTEKL EYK+ Q LPYFDRLDYVS
Sbjct: 15 FGPQHPAAHGVLCCLLYFCGEFIVYIDCIIGYLHRGTEKLCEYKSVEQCLPYFDRLDYVS 74
Query: 458 MMCNEQCYSLAVEKLLNSMFLCGPSTSELCLRR*PAT-EHIMAVGTHALDVGALTPFFWL 634
+ CNE SL E +L + L + + ++ + LD+G L+P W
Sbjct: 75 VCCNEHLLSLCFEYMLRCCLSLRCAFMRLLIVEFTRSFNGLLCISCMVLDLGCLSPLLWS 134
Query: 635 FEEREKMMEFYERVSGARMH 694
FEER+K+M F++ G RMH
Sbjct: 135 FEERDKLMTFFDLCCGCRMH 154
>UniRef50_Q9PM99 Cluster: NADH-quinone oxidoreductase subunit D;
n=24; Epsilonproteobacteria|Rep: NADH-quinone
oxidoreductase subunit D - Campylobacter jejuni
Length = 408
Score = 128 bits (310), Expect = 1e-28
Identities = 68/163 (41%), Positives = 96/163 (58%), Gaps = 3/163 (1%)
Frame = +2
Query: 251 KEVRNMILNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALP 430
+E MI+N GPQHP+AHG LRL+LELDGE V A P IG +HRG EK+ E Y + +P
Sbjct: 18 QEDSKMIINLGPQHPSAHGNLRLILELDGEQVVKARPCIGYMHRGMEKMAENMIYQEFIP 77
Query: 431 YFDRLDYVSMMCNEQCYSLAVEKLLNSMFLCGPSTSE-LCLRR*PATEHIMAVGTHALDV 607
DR+DY++ N Y AVEKL + + L T H++ + THALD+
Sbjct: 78 TTDRMDYIAASANNYAYCAAVEKLCGLEIPRRAAVIRMILLELNRITSHLLWLATHALDI 137
Query: 608 GALTPFFWLFEEREKMMEFYERVSGARM-HALHQTRG-FADMP 730
GA++ F + F ERE +++ E+ GAR+ H+ + G D+P
Sbjct: 138 GAMSVFLYCFREREYVLDLIEKYCGARLTHSSMRIGGVMLDLP 180
>UniRef50_Q1AVI6 Cluster: NADH dehydrogenase; n=1; Rubrobacter
xylanophilus DSM 9941|Rep: NADH dehydrogenase -
Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129)
Length = 358
Score = 128 bits (309), Expect = 1e-28
Identities = 71/159 (44%), Positives = 93/159 (58%), Gaps = 6/159 (3%)
Frame = +2
Query: 272 LNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDY 451
+N GPQHPA HG+LRL+LELDGET+ DP +G LHR EK+ E +TY +P DRLDY
Sbjct: 1 MNMGPQHPAMHGLLRLILELDGETIVRCDPVMGYLHRCQEKIAENRTYPAVIPLTDRLDY 60
Query: 452 VSMMCNEQCYSLAVEKLLNSMFLCGPSTSE----LCLRR*PATEHIMAVGTHALDVGALT 619
+ M NE Y LAVE LL P +E L H+ ++G L++GA T
Sbjct: 61 FANMHNEHGYCLAVEDLLGVEI---PPRAEYIRVLMCELMRIASHLPSIGFLLLELGAFT 117
Query: 620 PFFWLFEEREKMMEFYERVSGARM--HALHQTRGFADMP 730
P + F ERE++ F+E V+GARM H + AD+P
Sbjct: 118 PILYAFRERERIQNFFEAVTGARMMFHYIRIGGVKADLP 156
>UniRef50_Q2S5J0 Cluster: NADH dehydrogenase I, D subunit; n=4;
Bacteria|Rep: NADH dehydrogenase I, D subunit -
Salinibacter ruber (strain DSM 13855)
Length = 451
Score = 128 bits (308), Expect = 2e-28
Identities = 64/151 (42%), Positives = 89/151 (58%), Gaps = 1/151 (0%)
Frame = +2
Query: 266 MILNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRL 445
MILN GPQHPA HGVLR V+++DGET+ + IG LHRG EKL E+KTY + +PY DR+
Sbjct: 67 MILNIGPQHPATHGVLRCVVKMDGETIEKSVLDIGYLHRGIEKLAEHKTYQEFMPYTDRM 126
Query: 446 DYVSMMCNEQCYSLAVEKLLNSMFLCGPSTSELCLRR*P-ATEHIMAVGTHALDVGALTP 622
DY+S N + LAVEKL + + + + H + +G +D GA++
Sbjct: 127 DYLSPYSNNVAWCLAVEKLADIEVPERAQWIRMIMSELARISSHCLWLGVGMMDAGAVSG 186
Query: 623 FFWLFEEREKMMEFYERVSGARMHALHQTRG 715
F W F+ERE++ + V+GAR H G
Sbjct: 187 FVWTFQEREEIYSIMDEVAGARFTVSHSRIG 217
>UniRef50_A7CUG2 Cluster: NADH dehydrogenase I, D subunit; n=1;
Opitutaceae bacterium TAV2|Rep: NADH dehydrogenase I, D
subunit - Opitutaceae bacterium TAV2
Length = 419
Score = 127 bits (306), Expect = 3e-28
Identities = 63/143 (44%), Positives = 88/143 (61%), Gaps = 2/143 (1%)
Frame = +2
Query: 266 MILNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRL 445
M ++ GP HP+ HGVLRL LELDGE V DP IG LHRG EK+ E TY Q +PY DRL
Sbjct: 35 MSISMGPSHPSTHGVLRLQLELDGEIVTKCDPVIGYLHRGDEKIAENMTYNQFVPYTDRL 94
Query: 446 DYVSMMCNEQCYSLAVEKL--LNSMFLCGPSTSELCLRR*PATEHIMAVGTHALDVGALT 619
DY++ + N Y++AVE+L L C + + + H++ G+ A+D G+ T
Sbjct: 95 DYLAPLANNVAYAIAVERLAGLEVPARC-QAIRVIVAELARISSHLLGFGSFAMDTGSWT 153
Query: 620 PFFWLFEEREKMMEFYERVSGAR 688
F + F EREK+ + +E ++GAR
Sbjct: 154 AFMYQFNEREKLYKLFEELTGAR 176
>UniRef50_A3ZL03 Cluster: NADH dehydrogenase; n=1; Blastopirellula
marina DSM 3645|Rep: NADH dehydrogenase -
Blastopirellula marina DSM 3645
Length = 418
Score = 124 bits (300), Expect = 2e-27
Identities = 66/158 (41%), Positives = 95/158 (60%), Gaps = 3/158 (1%)
Frame = +2
Query: 266 MILNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRL 445
M++N GPQHP+ HGVLRLVL DGE V A PHIG LHR EK+ E T Q +PY DR+
Sbjct: 36 MLVNMGPQHPSTHGVLRLVLRTDGEVVSEATPHIGYLHRCAEKIGENLTPRQWIPYTDRM 95
Query: 446 DYVSMMCNEQCYSLAVEKLLN-SMFLCGPSTSELCLRR*PATEHIMAVGTHALDVGALTP 622
DY++ M ++LAVEKL++ + + H++ +GT+ LD+G+ +P
Sbjct: 96 DYLAGMNMNLGWALAVEKLIDYDLPEKARHLRVIIAELNRIASHLVGMGTYGLDLGSFSP 155
Query: 623 FFWLFEEREKMMEFYERVSGARMHALHQTRG--FADMP 730
F + F ERE++++ E GAR+ + T G AD+P
Sbjct: 156 FLYAFRERERILDLLEDACGARLTYSYLTPGGATADLP 193
>UniRef50_A4XCQ7 Cluster: NADH dehydrogenase; n=5;
Actinomycetales|Rep: NADH dehydrogenase - Salinispora
tropica CNB-440
Length = 388
Score = 124 bits (299), Expect = 2e-27
Identities = 64/152 (42%), Positives = 90/152 (59%), Gaps = 1/152 (0%)
Frame = +2
Query: 263 NMILNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDR 442
+M+LN GPQHP+ HGVLRL L LDGE V +A+P +G +HRG EKL E + Y Q + +R
Sbjct: 27 DMVLNIGPQHPSTHGVLRLRLVLDGERVVSAEPVVGYMHRGAEKLFEVRDYRQIIVLANR 86
Query: 443 LDYVSMMCNEQCYSLAVEKLLNSMFLCGPSTSELCLRR-*PATEHIMAVGTHALDVGALT 619
D++S NE LAVE+LL + + L H+M +G++ L++GA+T
Sbjct: 87 HDWLSAFANELGVVLAVERLLGMEVPERATWLRMALAELNRVLNHLMFLGSYPLEIGAIT 146
Query: 620 PFFWLFEEREKMMEFYERVSGARMHALHQTRG 715
P F+ F ERE + E VSG R+H + G
Sbjct: 147 PMFYAFRERETLQTALEEVSGGRIHYMFNRVG 178
>UniRef50_Q8KEC0 Cluster: NADH dehydrogenase I, 49 kDa subunit;
n=12; Bacteroidetes/Chlorobi group|Rep: NADH
dehydrogenase I, 49 kDa subunit - Chlorobium tepidum
Length = 368
Score = 124 bits (298), Expect = 3e-27
Identities = 63/143 (44%), Positives = 87/143 (60%), Gaps = 1/143 (0%)
Frame = +2
Query: 266 MILNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRL 445
M+L+ GPQHP+ HGVLRL DGE V A+P++G LHR EK E Y +PY DR+
Sbjct: 1 MVLSMGPQHPSTHGVLRLECITDGEVVVEAEPYLGYLHRCFEKHCEKIDYPAIVPYTDRM 60
Query: 446 DYVSMMCNEQCYSLAVEKLLNSMFLCGPSTSELCLRR-*PATEHIMAVGTHALDVGALTP 622
DY++ M NE Y + VEKLL+ + + H++A+GT+A+D+GA TP
Sbjct: 61 DYLAGMNNELAYCITVEKLLDIEIPRRVEFIRVIVAELNRIASHLVAIGTYAIDLGAFTP 120
Query: 623 FFWLFEEREKMMEFYERVSGARM 691
F + F +RE +M E +SGARM
Sbjct: 121 FLFCFRDREHIMSLLEWISGARM 143
>UniRef50_O66826 Cluster: NADH dehydrogenase I chain D; n=4; Aquifex
aeolicus|Rep: NADH dehydrogenase I chain D - Aquifex
aeolicus
Length = 593
Score = 124 bits (298), Expect = 3e-27
Identities = 58/150 (38%), Positives = 92/150 (61%), Gaps = 3/150 (2%)
Frame = +2
Query: 251 KEVRNMILNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALP 430
K+ ++LN+GP HP HG + + +L+GE + D +G LHRG EKL E++ Y Q L
Sbjct: 214 KKKAQIVLNWGPLHPGTHGTMWFLFDLEGERIVQTDVILGQLHRGVEKLAEHEMYNQFLV 273
Query: 431 YFDRLDYVSMMCNEQCYSLAVEKLLNSMFLCGPSTS---ELCLRR*PATEHIMAVGTHAL 601
Y DR+DY+S +C+ Q + +A+E+L+ P + H++ +GT+AL
Sbjct: 274 YTDRMDYLSALCSNQAWVVAIERLMGIHDKVPPKAKYIRTMMSELQRINSHLLWLGTYAL 333
Query: 602 DVGALTPFFWLFEEREKMMEFYERVSGARM 691
D+GALT F + F+EREK+M+ E ++GAR+
Sbjct: 334 DLGALTIFLYAFKEREKIMDIIEGITGARL 363
>UniRef50_Q3ZXR8 Cluster: Proton-translocating NADH-quinone
oxidoreductase, D subunit; n=7; Bacteria|Rep:
Proton-translocating NADH-quinone oxidoreductase, D
subunit - Dehalococcoides sp. (strain CBDB1)
Length = 367
Score = 123 bits (297), Expect = 4e-27
Identities = 70/168 (41%), Positives = 97/168 (57%), Gaps = 9/168 (5%)
Frame = +2
Query: 254 EVRNMILNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPY 433
+ N ILN GPQHP+ HGV RL + LDGE + +P G LHRG EKL E +TY Q +P+
Sbjct: 4 KTENFILNIGPQHPSTHGVFRLRIVLDGEVITDLEPVFGYLHRGIEKLAEGRTYLQDIPF 63
Query: 434 FDRLDYVSMMCNEQCYSLAVEKLLNSMFLCGPSTSELC------LRR*PATEHIMAVGTH 595
DRLDY+ M N Y +AVEKL + P +E L+R H+ +G
Sbjct: 64 TDRLDYLGSMTNNHAYVMAVEKLAG---ITVPERAEYIRVILDELQR--IASHLAGLGFF 118
Query: 596 ALDVGAL-TPFFWLFEEREKMMEFYERVSGARM-HALHQTRGFA-DMP 730
D+GAL TP ++F EREK++E ++ SG R+ + ++ GF D+P
Sbjct: 119 LNDLGALQTPLLYMFREREKIVELFDMCSGQRLNYNYYRFGGFVQDLP 166
>UniRef50_Q67P19 Cluster: NADH dehydrogenase I subunit D; n=1;
Symbiobacterium thermophilum|Rep: NADH dehydrogenase I
subunit D - Symbiobacterium thermophilum
Length = 404
Score = 122 bits (294), Expect = 9e-27
Identities = 64/154 (41%), Positives = 90/154 (58%), Gaps = 4/154 (2%)
Frame = +2
Query: 266 MILNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRL 445
M L+ GP HPA HGVLR+ LEL+GETV A+P G LH G EK E+ T+ QA DR+
Sbjct: 17 MTLSIGPHHPATHGVLRVKLELEGETVVKAEPETGFLHTGIEKTAEHLTWNQATTVMDRM 76
Query: 446 DYVSMMCNEQCYSLAVEKLL---NSMFLCGPSTSELCLRR*PATEHIMAVGTHALDVGAL 616
DY+S + N Y +AVEKLL + + T + L H++ +GT LD G +
Sbjct: 77 DYLSPISNNTGYVMAVEKLLGIEDRIPEKARVTRVILLELNRVASHLVGLGTGGLDYGNI 136
Query: 617 -TPFFWLFEEREKMMEFYERVSGARMHALHQTRG 715
TP FW FE R+++++ +E +G RM+ + G
Sbjct: 137 GTPIFWAFELRDRILDIFEHTTGQRMNPSYMRVG 170
>UniRef50_Q746S4 Cluster: NADH dehydrogenase I, B/C/D subunits;
n=32; Proteobacteria|Rep: NADH dehydrogenase I, B/C/D
subunits - Geobacter sulfurreducens
Length = 792
Score = 122 bits (293), Expect = 1e-26
Identities = 61/150 (40%), Positives = 90/150 (60%), Gaps = 1/150 (0%)
Frame = +2
Query: 248 RKEVRNMILNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQAL 427
R + +ILN GPQHP HG++R VL+LDGE + D IG HRG EK+ E + + Q +
Sbjct: 403 RIDEETLILNLGPQHPGTHGIIRFVLKLDGEEIVDMDTDIGYHHRGAEKIGERQHWNQFI 462
Query: 428 PYFDRLDYVSMMCNEQCYSLAVEKLLN-SMFLCGPSTSELCLRR*PATEHIMAVGTHALD 604
PY DR+DY++ + N Y +VE+L ++ G + + H++ +GT A D
Sbjct: 463 PYTDRIDYLAGVQNNLAYVNSVERLCGITVPDRGIAIRVMLAELFRIANHLVWLGTFAAD 522
Query: 605 VGALTPFFWLFEEREKMMEFYERVSGARMH 694
VGA+TP F+ F +REK+ + E V+G RMH
Sbjct: 523 VGAMTPVFYTFTDREKIFDIVEMVTGGRMH 552
>UniRef50_Q6MDR3 Cluster: Putative NADH-ubiquinone oxidoreductase
chain C/D; n=1; Candidatus Protochlamydia amoebophila
UWE25|Rep: Putative NADH-ubiquinone oxidoreductase chain
C/D - Protochlamydia amoebophila (strain UWE25)
Length = 402
Score = 122 bits (293), Expect = 1e-26
Identities = 64/143 (44%), Positives = 86/143 (60%), Gaps = 1/143 (0%)
Frame = +2
Query: 266 MILNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRL 445
M LN GPQHP+ HGVLRL L L+GE V + DP IG LH G EK E +TY Q DRL
Sbjct: 19 MELNLGPQHPSTHGVLRLKLRLEGEVVLSCDPVIGYLHTGVEKECESRTYHQVFTLVDRL 78
Query: 446 DYVSMMCNEQCYSLAVEKLLNSMFLCGPSTSELCLRR*P-ATEHIMAVGTHALDVGALTP 622
DY+S EQ ++ A+E+L+N T + L H++ GT AL++ +
Sbjct: 79 DYLSGPAEEQAFAGALERLMNIEVPERAQTIRIILLELSRIASHLLWAGTSALELNMSSV 138
Query: 623 FFWLFEEREKMMEFYERVSGARM 691
F + F EREK+++ +E+VSGARM
Sbjct: 139 FMYSFAEREKILDLFEQVSGARM 161
>UniRef50_Q979M3 Cluster: NADH dehydrogenase I chain D; n=6;
Thermoplasmatales|Rep: NADH dehydrogenase I chain D -
Thermoplasma volcanium
Length = 369
Score = 121 bits (292), Expect = 2e-26
Identities = 63/149 (42%), Positives = 90/149 (60%), Gaps = 1/149 (0%)
Frame = +2
Query: 272 LNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDY 451
+NFGPQHP+ HGVLRL ++LDGE V+ +P IG LHR EK+ E + Y + YFDR+DY
Sbjct: 9 VNFGPQHPSMHGVLRLKVKLDGEIVKDVEPIIGYLHRNAEKICELQFYCDNMIYFDRMDY 68
Query: 452 VSMMCNEQCYSLAVEKLLNSMFLCGPSTSELCL-RR*PATEHIMAVGTHALDVGALTPFF 628
V+ M E Y A EKLL+ + + H++ +G LD+G LTPFF
Sbjct: 69 VAAMNMEIGYLEAAEKLLDVEPPGRAKWIRVMMGELNRIASHLVWLGAFGLDLGMLTPFF 128
Query: 629 WLFEEREKMMEFYERVSGARMHALHQTRG 715
+ F+EREK+++ + VSG+R + + G
Sbjct: 129 YCFKEREKILKIFTEVSGSRQQLNYMSIG 157
>UniRef50_P65570 Cluster: NADH-quinone oxidoreductase subunit D;
n=41; Bacteria|Rep: NADH-quinone oxidoreductase subunit
D - Mycobacterium bovis
Length = 440
Score = 119 bits (287), Expect = 6e-26
Identities = 59/149 (39%), Positives = 92/149 (61%), Gaps = 3/149 (2%)
Frame = +2
Query: 266 MILNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRL 445
+++N GPQHP+ HGVLRL+LE++GETV A IG LH G EK +EY+ +TQ + + R+
Sbjct: 39 IVVNMGPQHPSTHGVLRLILEIEGETVVEARCGIGYLHTGIEKNLEYRYWTQGVTFVTRM 98
Query: 446 DYVSMMCNEQCYSLAVEKLLNSMFLCGPSTS---ELCLRR*PATEHIMAVGTHALDVGAL 616
DY+S NE Y L VEKLL + L + + H++A+ T +++GA+
Sbjct: 99 DYLSPFFNETAYCLGVEKLLGITDEIPERVNVIRVLMMELNRISSHLVALATGGMELGAM 158
Query: 617 TPFFWLFEEREKMMEFYERVSGARMHALH 703
TP F F RE ++ +E+++G RM++ +
Sbjct: 159 TPMFVGFRAREIVLTLFEKITGLRMNSAY 187
>UniRef50_A7H9U8 Cluster: NADH dehydrogenase; n=2;
Anaeromyxobacter|Rep: NADH dehydrogenase -
Anaeromyxobacter sp. Fw109-5
Length = 381
Score = 118 bits (285), Expect = 1e-25
Identities = 62/158 (39%), Positives = 93/158 (58%), Gaps = 3/158 (1%)
Frame = +2
Query: 266 MILNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRL 445
M+LNFGPQHP+ HGV+ ++E DGE ++ A P +G LHR EK+ E Y +P+ DR+
Sbjct: 16 MVLNFGPQHPSTHGVINFIVETDGEVMKRAIPDVGYLHRSIEKIGEVTGYPGFMPFTDRI 75
Query: 446 DYVSMMCNEQCYSLAVEKLLN-SMFLCGPSTSELCLRR*PATEHIMAVGTHALDVGALTP 622
DYV+ M + Y++AVEKLL + + H++AVGT +D+GA TP
Sbjct: 76 DYVAAMFANEGYAIAVEKLLKVEVPPRAQWLRAISGELVRIASHLIAVGTMTMDIGAFTP 135
Query: 623 FFWLFEEREKMMEFYERVSGARM-HALHQTRGFA-DMP 730
ERE++ ++ E + GAR+ + H+ G A D+P
Sbjct: 136 MVHGLREREEINDYIEALCGARLTYNYHRIGGVAFDLP 173
>UniRef50_P0A1Y6 Cluster: NADH-quinone oxidoreductase subunit C/D;
n=95; cellular organisms|Rep: NADH-quinone
oxidoreductase subunit C/D - Salmonella typhimurium
Length = 600
Score = 116 bits (280), Expect = 5e-25
Identities = 64/167 (38%), Positives = 92/167 (55%), Gaps = 3/167 (1%)
Frame = +2
Query: 239 KTGRKEVRNMILNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYT 418
K G M LN GP HP+AHG R++L+LDGE + P IG HRG EK+ E +++
Sbjct: 207 KRGTDNEDFMFLNLGPNHPSAHGAFRIILQLDGEEIVDCVPDIGYHHRGAEKMGERQSWH 266
Query: 419 QALPYFDRLDYVSMMCNEQCYSLAVEKLLNSMFLCGPSTSELCLRR-*PATEHIMAVGTH 595
+PY DR++Y+ NE Y LAVEKL + + L H++ + T
Sbjct: 267 SYIPYTDRIEYLGGCVNEMPYVLAVEKLAGITVPDRVNVIRVMLSELFRINSHLLYISTF 326
Query: 596 ALDVGALTPFFWLFEEREKMMEFYERVSGARMH-ALHQTRGFA-DMP 730
DVGA+TP F+ F +R+K+ + E ++G RMH A + G A D+P
Sbjct: 327 IQDVGAMTPVFFAFTDRQKIYDLVEAITGFRMHPAWFRIGGVAHDLP 373
>UniRef50_Q6MIR5 Cluster: NADH dehydrogenase I,D subunit; n=1;
Bdellovibrio bacteriovorus|Rep: NADH dehydrogenase I,D
subunit - Bdellovibrio bacteriovorus
Length = 560
Score = 116 bits (278), Expect = 8e-25
Identities = 60/141 (42%), Positives = 82/141 (58%), Gaps = 1/141 (0%)
Frame = +2
Query: 272 LNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDY 451
LN GP H A HG LR++ E+DGET+ + IG LHR EK+ E Y Q +PY DRL+Y
Sbjct: 179 LNIGPSHTAMHGTLRVMAEMDGETIVRCNNEIGYLHRCFEKMAETHPYNQVIPYTDRLNY 238
Query: 452 VSMMCNEQCYSLAVEKLLNSMFLCGPSTSELCLRR*P-ATEHIMAVGTHALDVGALTPFF 628
S N Y AVE+LL + L +H +A+GT A+D+GALT FF
Sbjct: 239 CSAPMNNIGYCKAVERLLGVEIPPKAQAMRVILAELSRIIDHTIAIGTGAMDLGALTSFF 298
Query: 629 WLFEEREKMMEFYERVSGARM 691
++F REK+ +E++ GAR+
Sbjct: 299 YMFGMREKVYGLFEKLCGARL 319
>UniRef50_A5UXK3 Cluster: NADH dehydrogenase; n=3; Chloroflexi
(class)|Rep: NADH dehydrogenase - Roseiflexus sp. RS-1
Length = 374
Score = 114 bits (274), Expect = 2e-24
Identities = 61/148 (41%), Positives = 84/148 (56%), Gaps = 2/148 (1%)
Frame = +2
Query: 254 EVRNMILNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPY 433
+ + + +N GPQHP+ HGV R+++ +DGET+ P G LHR E+L E TY Q++PY
Sbjct: 3 QTQELQINIGPQHPSTHGVFRMIVTVDGETIVDLKPVFGYLHRNHEQLAEVSTYIQSMPY 62
Query: 434 FDRLDYVSMMCNEQCYSLAVEKLLN-SMFLCGPSTSELCLRR*PATEHIMAVGTHALDVG 610
DRLDY + M N +LAVEKL S+ L + H AVG D+G
Sbjct: 63 TDRLDYFNSMANNHALALAVEKLAGISVPQRAEYIRVLMVELTRILNHASAVGFLLNDMG 122
Query: 611 A-LTPFFWLFEEREKMMEFYERVSGARM 691
A TP + EREK+++ +E SGARM
Sbjct: 123 AWQTPLMFGMREREKILDLFEMASGARM 150
>UniRef50_Q190M8 Cluster: NADH-ubiquinone oxidoreductase, chain
49kDa; n=2; Desulfitobacterium hafniense|Rep:
NADH-ubiquinone oxidoreductase, chain 49kDa -
Desulfitobacterium hafniense (strain DCB-2)
Length = 370
Score = 113 bits (273), Expect = 3e-24
Identities = 56/143 (39%), Positives = 84/143 (58%), Gaps = 1/143 (0%)
Frame = +2
Query: 266 MILNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRL 445
++LN GPQHP+ HGV R+V+ L GETV +P IG LHRG EK+ E +TY Q +PY DRL
Sbjct: 12 LLLNMGPQHPSMHGVFRMVVRLQGETVTGIEPKIGYLHRGLEKIAESRTYPQFIPYTDRL 71
Query: 446 DYVSMMCNEQCYSLAVEKLLNSMFLCGPSTSELCLRR*PA-TEHIMAVGTHALDVGALTP 622
DY++ N Y VEKL+ + L H + + + ALD+ T
Sbjct: 72 DYLASPHNNLAYVQTVEKLMGLEIPERAEYLRIILAELARFASHQVFIASAALDMAGWTA 131
Query: 623 FFWLFEEREKMMEFYERVSGARM 691
+ + F +RE++++ +E +SG+R+
Sbjct: 132 WGYPFRDRERILDLFEMMSGSRL 154
>UniRef50_P56753 Cluster: NAD(P)H-quinone oxidoreductase chain H,
chloroplast (EC 1.6.5.-) (NAD(P)H dehydrogenase, chain
H); n=129; cellular organisms|Rep: NAD(P)H-quinone
oxidoreductase chain H, chloroplast (EC 1.6.5.-)
(NAD(P)H dehydrogenase, chain H) - Arabidopsis thaliana
(Mouse-ear cress)
Length = 393
Score = 112 bits (270), Expect = 7e-24
Identities = 63/158 (39%), Positives = 87/158 (55%), Gaps = 3/158 (1%)
Frame = +2
Query: 266 MILNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRL 445
MI+N GP HP+ HGVLRL++ LDGE V +P +G LHRG EK+ E + Q LPY R
Sbjct: 11 MIVNMGPHHPSMHGVLRLIVTLDGEDVVDCEPILGYLHRGMEKIAENRAIIQYLPYVTRW 70
Query: 446 DYVSMMCNEQCYSLAVEKLLNSMFLCGPS-TSELCLRR*PATEHIMAVGTHALDVGALTP 622
DY++ M E E+L N S + L H++ +G D+GA TP
Sbjct: 71 DYLATMFTEAITVNGPEQLGNIQVPKRASYIRVIMLELSRIASHLLWLGPFMADIGAQTP 130
Query: 623 FFWLFEEREKMMEFYERVSGAR-MHALHQTRGF-ADMP 730
FF++F ERE + + +E +G R MH + G AD+P
Sbjct: 131 FFYIFREREFVYDLFEAATGMRMMHNFFRIGGIAADLP 168
>UniRef50_A7H9V5 Cluster: NADH dehydrogenase; n=4;
Cystobacterineae|Rep: NADH dehydrogenase -
Anaeromyxobacter sp. Fw109-5
Length = 431
Score = 107 bits (257), Expect = 3e-22
Identities = 63/148 (42%), Positives = 87/148 (58%), Gaps = 6/148 (4%)
Frame = +2
Query: 266 MILNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRL 445
M +N GP HPA HGV R V+ELDGE +R+ IG LHRG EK E T+TQ PY DRL
Sbjct: 48 MTVNLGPSHPAMHGVTRAVVELDGEMIRSMKLDIGFLHRGFEKSCENVTWTQCFPYTDRL 107
Query: 446 DYVSMMCNEQCYSLAVEKLL------NSMFLCGPSTSELCLRR*PATEHIMAVGTHALDV 607
+YVS + N ++LAVEKL + +L TSE + R +H+ VG A+++
Sbjct: 108 NYVSSIMNNVGFALAVEKLCKLDVPERAKYL-RVVTSE--IHR--ICDHLTLVGAMAMEL 162
Query: 608 GALTPFFWLFEEREKMMEFYERVSGARM 691
GA+T F + E R+ + + + GAR+
Sbjct: 163 GAMTVFLYAIEARDIIYDRLAELCGARL 190
>UniRef50_Q8A0F6 Cluster: NADH dehydrogenase I, chain D; n=8;
Bacteroidetes|Rep: NADH dehydrogenase I, chain D -
Bacteroides thetaiotaomicron
Length = 538
Score = 105 bits (253), Expect = 8e-22
Identities = 53/150 (35%), Positives = 80/150 (53%), Gaps = 1/150 (0%)
Frame = +2
Query: 269 ILNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLD 448
++N GPQHPA HGV+R + L+GE +R D + G +HRG EK+ E TY Q L DRLD
Sbjct: 181 VVNIGPQHPATHGVMRFRVSLEGEIIRKIDANCGYIHRGIEKMNESLTYPQTLALTDRLD 240
Query: 449 YVSMMCNEQCYSLAVEKLLNSMFLCGPSTSELCLRR*PATE-HIMAVGTHALDVGALTPF 625
Y+ N + +EK + + + H++ A+D+GALT F
Sbjct: 241 YLGAHQNRHALCMCIEKAMGIEVSDRVKYIRTIMDELQRIDSHLLFYSALAMDLGALTAF 300
Query: 626 FWLFEEREKMMEFYERVSGARMHALHQTRG 715
F+ F +REK+++ +E G R+ + T G
Sbjct: 301 FYGFRDREKILDIFEETCGGRLIMNYNTIG 330
>UniRef50_Q2C5T4 Cluster: NADH dehydrogenase I, B/C/D subunits; n=2;
Vibrionaceae|Rep: NADH dehydrogenase I, B/C/D subunits -
Photobacterium sp. SKA34
Length = 565
Score = 102 bits (245), Expect = 8e-21
Identities = 51/151 (33%), Positives = 81/151 (53%), Gaps = 1/151 (0%)
Frame = +2
Query: 245 GRKEVRNMILNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQA 424
G+++ +M+LN GP HP GV+RL +++ GE + D IG HRG EK+ E T+
Sbjct: 174 GKQDDGSMVLNIGPNHPGTDGVIRLKVKMKGEFIEDLDQEIGFHHRGAEKIAERHTFHNY 233
Query: 425 LPYFDRLDYVSMMCNEQCYSLAVEKLLNSMFLCGPSTSELCL-RR*PATEHIMAVGTHAL 601
+PY DR+DY+ + E Y L +E + T + L + H++ G+
Sbjct: 234 IPYTDRIDYLGGVAGELPYLLGLEAMTGIEVPERAKTMRIMLCELFRISSHLVWFGSITH 293
Query: 602 DVGALTPFFWLFEEREKMMEFYERVSGARMH 694
++G + P F+ F EREK+ + E + G RMH
Sbjct: 294 NLGGMAPAFYAFTEREKIFDVIELICGGRMH 324
>UniRef50_A1ALP2 Cluster: NADH dehydrogenase; n=1; Pelobacter
propionicus DSM 2379|Rep: NADH dehydrogenase -
Pelobacter propionicus (strain DSM 2379)
Length = 403
Score = 102 bits (245), Expect = 8e-21
Identities = 52/144 (36%), Positives = 80/144 (55%), Gaps = 1/144 (0%)
Frame = +2
Query: 263 NMILNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDR 442
++++N GP HPA HG ++++ LDGE V AD H G LHRG EK E+ TY + +P+ DR
Sbjct: 19 HVLVNMGPSHPATHGTIQIIAALDGERVAKADIHCGYLHRGFEKESEHHTYHKIIPFTDR 78
Query: 443 LDYVSMMCNEQCYSLAVEKLLN-SMFLCGPSTSELCLRR*PATEHIMAVGTHALDVGALT 619
L+Y S + N Y VEKLL + L +H+ V +++GA+T
Sbjct: 79 LNYCSALNNNFAYVEGVEKLLGIELTPRCIYLRTLLAEYNRVADHVTCVAATVMEMGAMT 138
Query: 620 PFFWLFEEREKMMEFYERVSGARM 691
F +L R+ + E +++GAR+
Sbjct: 139 AFLYLMTIRDYIFEHLNQLTGARL 162
>UniRef50_A0RMD1 Cluster: NADH-quinone oxidoreductase chain c/d;
n=1; Campylobacter fetus subsp. fetus 82-40|Rep:
NADH-quinone oxidoreductase chain c/d - Campylobacter
fetus subsp. fetus (strain 82-40)
Length = 561
Score = 100 bits (240), Expect = 3e-20
Identities = 53/140 (37%), Positives = 79/140 (56%), Gaps = 1/140 (0%)
Frame = +2
Query: 272 LNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDY 451
LN GP HPA HG +R + LDGE + + IG LHRG EK E +Y Q +PY DRL+Y
Sbjct: 180 LNIGPSHPATHGTIRNFVALDGEKIISCVTEIGYLHRGFEKACENHSYAQIIPYTDRLNY 239
Query: 452 VSMMCNEQCYSLAVEKLLN-SMFLCGPSTSELCLRR*PATEHIMAVGTHALDVGALTPFF 628
S M N Y+ AVE+ L ++ G + +H + +G +D+G LT ++
Sbjct: 240 CSAMLNNVGYAKAVEEALGLNLPDRGIFMRVILGELARIIDHEVCLGAMFVDMGGLTNYW 299
Query: 629 WLFEEREKMMEFYERVSGAR 688
+L+ RE++ F +++GAR
Sbjct: 300 YLYNPRERIYNFLSKLTGAR 319
>UniRef50_Q9P9G0 Cluster: F420H2 dehydrogenase subunit FpoD; n=6;
Archaea|Rep: F420H2 dehydrogenase subunit FpoD -
Methanosarcina mazei (Methanosarcina frisia)
Length = 374
Score = 97.9 bits (233), Expect = 2e-19
Identities = 53/159 (33%), Positives = 88/159 (55%), Gaps = 2/159 (1%)
Frame = +2
Query: 254 EVRNMILNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPY 433
E MI++ GPQHP G RL L+L GET+ A+ +G +H+G EK++E +TY Q +
Sbjct: 6 ESNEMIVHLGPQHPMQPGPFRLNLKLKGETIMDAEVEMGYIHKGIEKILENRTYLQGITI 65
Query: 434 FDRLDYVSMMCNEQCYSLAVEKLLNSMFLCGPSTSELCLRR*PATE-HIMAVGTHALDVG 610
DR+ Y+ + NE+CY VEKLL+ + L + H++ +G + +G
Sbjct: 66 VDRICYLVALTNEECYVGCVEKLLDIEPPERAQYIRVILEELSRLQSHLLGLGEYGEFIG 125
Query: 611 ALTPFFWLFEEREKMMEFYERVSGARM-HALHQTRGFAD 724
++ F + +ERE ++ + V+GAR+ H+ + G D
Sbjct: 126 FVSMFMYTIKEREDILTLIDMVTGARVTHSYLRFGGVRD 164
>UniRef50_Q8F7Q2 Cluster: NADH dehydrogenase I, D subunit; n=8;
Bacteria|Rep: NADH dehydrogenase I, D subunit -
Leptospira interrogans
Length = 405
Score = 95.9 bits (228), Expect = 9e-19
Identities = 51/144 (35%), Positives = 82/144 (56%), Gaps = 1/144 (0%)
Frame = +2
Query: 263 NMILNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDR 442
++++N GP HPA HG+L+ V+++DGE + A+ IG +HR EKL E TY Q L DR
Sbjct: 21 HLLVNLGPSHPATHGILQNVIQIDGERIVEAESVIGYVHRCFEKLGERYTYNQFLVCTDR 80
Query: 443 LDYVSMMCNEQCYSLAVEKLLNSMFLCGPSTSELCLRR*P-ATEHIMAVGTHALDVGALT 619
++YVS N + LAVEK++ + + + +HI+ G +D+GA +
Sbjct: 81 MNYVSTPLNNIGWILAVEKMMQIEVPDRVTYVRMIISELSRIIDHIICTGILGVDLGAFS 140
Query: 620 PFFWLFEEREKMMEFYERVSGARM 691
LF RE + + E+++GAR+
Sbjct: 141 GMLHLFHHRENIYQIIEKLTGARL 164
>UniRef50_Q1K3R4 Cluster: NADH dehydrogenase; n=4;
Deltaproteobacteria|Rep: NADH dehydrogenase -
Desulfuromonas acetoxidans DSM 684
Length = 374
Score = 95.9 bits (228), Expect = 9e-19
Identities = 48/142 (33%), Positives = 79/142 (55%), Gaps = 1/142 (0%)
Frame = +2
Query: 269 ILNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLD 448
+LN GPQHP+ HGVLR++LE++GE V P +G HR EK+ E+K +P R+D
Sbjct: 16 VLNMGPQHPSTHGVLRVLLEMEGEYVIEPQPVLGYGHRCHEKIAEFKPAKSFMPNTARMD 75
Query: 449 YVSMMCNEQCYSLAVEKLLN-SMFLCGPSTSELCLRR*PATEHIMAVGTHALDVGALTPF 625
Y+ + Y+L +EK + + H++ G + LD+GA TP
Sbjct: 76 YLGALIYNHGYALLLEKATGIEVPRRADYIRVITSELNRIQSHLLWFGAYLLDLGAFTPI 135
Query: 626 FWLFEEREKMMEFYERVSGARM 691
+ F++RE++++ E V+G+R+
Sbjct: 136 MYAFDDREEILDILEDVTGSRL 157
>UniRef50_A2Q588 Cluster: NADH-ubiquinone oxidoreductase, chain
49kDa; Respiratory-chain NADH dehydrogenase, subunit 1;
n=2; core eudicotyledons|Rep: NADH-ubiquinone
oxidoreductase, chain 49kDa; Respiratory-chain NADH
dehydrogenase, subunit 1 - Medicago truncatula (Barrel
medic)
Length = 288
Score = 85.0 bits (201), Expect = 2e-15
Identities = 41/81 (50%), Positives = 52/81 (64%)
Frame = +2
Query: 266 MILNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRL 445
MI+N GPQHP+ HGVLRL++ LDGE V +P +G LHRG EK+ E +T Q LPY R
Sbjct: 11 MIVNMGPQHPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIAENRTIIQYLPYVTRW 70
Query: 446 DYVSMMCNEQCYSLAVEKLLN 508
DY++ M E E+L N
Sbjct: 71 DYLATMFTEAITVNGPEQLGN 91
>UniRef50_UPI00015BB164 Cluster: NADH-ubiquinone oxidoreductase,
chain 49kDa; n=1; Ignicoccus hospitalis KIN4/I|Rep:
NADH-ubiquinone oxidoreductase, chain 49kDa - Ignicoccus
hospitalis KIN4/I
Length = 540
Score = 82.6 bits (195), Expect = 9e-15
Identities = 45/138 (32%), Positives = 70/138 (50%), Gaps = 1/138 (0%)
Frame = +2
Query: 281 GPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSM 460
GPQHPA HG + +L L GE V P +G +HRG E + E K Y + +P DR Y+
Sbjct: 176 GPQHPATHGPVGFLLGLKGEIVEDVIPRLGYVHRGVEWIYEQKEYLKVIPLLDRQCYIDG 235
Query: 461 MCNEQCYSLAVEKLLN-SMFLCGPSTSELCLRR*PATEHIMAVGTHALDVGALTPFFWLF 637
+ E Y +A+E++++ + L H++ +G+ A +V LT F W
Sbjct: 236 IGWEWPYVMALEEIMDVKVDRRAQLLRILAAELSRIQSHLLYIGSFAENVNHLTAFAWTV 295
Query: 638 EEREKMMEFYERVSGARM 691
+RE + E ++G RM
Sbjct: 296 RDREVFINLLEMLTGQRM 313
>UniRef50_Q9HRL9 Cluster: NADH dehydrogenase/oxidoreductase; n=6;
Halobacteriaceae|Rep: NADH dehydrogenase/oxidoreductase
- Halobacterium salinarium (Halobacterium halobium)
Length = 562
Score = 82.6 bits (195), Expect = 9e-15
Identities = 57/161 (35%), Positives = 78/161 (48%), Gaps = 9/161 (5%)
Frame = +2
Query: 236 HKTGRKEVRNMILNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTY 415
H+ + M LN GP HPA HGVL + LDGE V +P IG LHR E++ + TY
Sbjct: 181 HEQAADDSDTMFLNIGPHHPATHGVLHVETVLDGEQVADVNPDIGYLHRCEEQMAQKGTY 240
Query: 416 T-QALPYFDRLDY-VSMMCNEQCYSLAVEKLLN-----SMFLCGPSTSELCLRR*PATEH 574
Q +PY DR DY + NE Y+ E L + + ELC H
Sbjct: 241 RHQIMPYPDRWDYGPGGILNEWAYARTAEDLADIDVPEYAQILRTMGGELC----RIACH 296
Query: 575 IMAVGTHALDV-GALTP-FFWLFEEREKMMEFYERVSGARM 691
++A+GT LD+ G T F + +RE + E ++G RM
Sbjct: 297 MLALGTFCLDIYGDFTAIFMYAMRDREVVQNILEDLTGQRM 337
>UniRef50_Q9X0U3 Cluster: NADH dehydrogenase, 49 kDa subunit,
putative; n=4; Thermotogaceae|Rep: NADH dehydrogenase,
49 kDa subunit, putative - Thermotoga maritima
Length = 368
Score = 76.6 bits (180), Expect = 6e-13
Identities = 43/145 (29%), Positives = 73/145 (50%), Gaps = 1/145 (0%)
Frame = +2
Query: 272 LNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDY 451
L FGP HP HG + + ++G+ V+ A P G LHRG EKL+E + + + R+
Sbjct: 6 LFFGPNHPGMHGNFSVHMYVEGDIVKKARPVPGFLHRGFEKLMERRYWYSNISLIPRICV 65
Query: 452 VSMMCNEQCYSLAVEKLLN-SMFLCGPSTSELCLRR*PATEHIMAVGTHALDVGALTPFF 628
NE CY++A+EK+ + + L HI VG +G T
Sbjct: 66 PEPDINEICYAMAIEKIAKVEVPERAQWIRMIVLELARIANHIWTVGGIGGPLGLYTASH 125
Query: 629 WLFEEREKMMEFYERVSGARMHALH 703
W +R+++++ +E +SGAR++ ++
Sbjct: 126 WGVADRDRILDIFEALSGARVYHMY 150
>UniRef50_Q8ZWW9 Cluster: NADH-ubiquinone oxidoreductase subunit;
n=4; Pyrobaculum|Rep: NADH-ubiquinone oxidoreductase
subunit - Pyrobaculum aerophilum
Length = 430
Score = 76.2 bits (179), Expect = 8e-13
Identities = 44/140 (31%), Positives = 75/140 (53%), Gaps = 3/140 (2%)
Frame = +2
Query: 278 FGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVS 457
+GPQHP++ G R ++E+DG+ V P G +HR EKL E + + Q +P F+RL
Sbjct: 55 WGPQHPSS-GHTRFIIEVDGDVVVNVTPDPGYVHRTMEKLGETRHWIQNIPLFERLSLPD 113
Query: 458 MMCNEQCYSLAVEKLLNSMFLCGPSTSELCL---RR*PATEHIMAVGTHALDVGALTPFF 628
+ Y+LA+E+L + + P L + + H+ +G HA+ +G+ T F
Sbjct: 114 AINVTWAYALAIERL--AKYDVSPRAQYLRVIMGELSRISTHLYDLGLHAIMIGSSTGFM 171
Query: 629 WLFEEREKMMEFYERVSGAR 688
W + RE +++ + SG+R
Sbjct: 172 WAYGLRELLVQLWAMASGSR 191
>UniRef50_A0RY68 Cluster: NADH-ubiquinone oxidoreductase, subunit D;
n=2; Thermoprotei|Rep: NADH-ubiquinone oxidoreductase,
subunit D - Cenarchaeum symbiosum
Length = 379
Score = 72.9 bits (171), Expect = 7e-12
Identities = 49/161 (30%), Positives = 82/161 (50%), Gaps = 4/161 (2%)
Frame = +2
Query: 260 RNMILNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFD 439
R M LN GPQHP + G +RLV+++DG+ + + DP G +HRG EK+ EY+ + +P+ +
Sbjct: 17 RIMTLNVGPQHPGS-GHMRLVVKIDGDYIVSCDPDPGYVHRGEEKMAEYRNFVLNIPHLE 75
Query: 440 RLDYVSMMCN-EQCYSLAVEKLLNSMFLCGPSTSELCLRR*PATEHIMA-VGTHALDVGA 613
R + CN Y LA E ++ + +I + + + +G
Sbjct: 76 R-PVIHDSCNILYPYCLAAEDIIGVEVPERAKYVRVIASELNKCIYIQYWLAIYGIFLGH 134
Query: 614 LTPFFWLFEEREKMMEFYERVSGARM-HALHQTRGFA-DMP 730
T F W +RE +++ E+++GAR+ HA G D+P
Sbjct: 135 STMFMWPAGDRELLIDLMEKLTGARVTHAYFVPGGVRNDLP 175
>UniRef50_Q980H3 Cluster: NADH dehydrogenase subunit D; n=2;
Sulfolobaceae|Rep: NADH dehydrogenase subunit D -
Sulfolobus solfataricus
Length = 410
Score = 71.3 bits (167), Expect = 2e-11
Identities = 46/145 (31%), Positives = 75/145 (51%), Gaps = 5/145 (3%)
Frame = +2
Query: 272 LNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDY 451
LN GPQHP + G +R+ ++L+G+ + D +G +HR EKL E + Y +P +R
Sbjct: 30 LNVGPQHPGS-GHMRIFVKLNGDIIEDVDLDVGYVHRAVEKLSENRNYMHLIPLVERPAI 88
Query: 452 VSMMCNEQCYSLAVEKLLNSMFLCGPSTSELCLRR*PA-----TEHIMAVGTHALDVGAL 616
+ + Y +AVEK+L + P ++ LR A H+ +G A+ +G
Sbjct: 89 LDSIHMNLGYIIAVEKILG---VDVPERAQY-LRSFAAEVNRIASHLYGLGILAIFLGHS 144
Query: 617 TPFFWLFEEREKMMEFYERVSGARM 691
T F W F +RE + E ++GAR+
Sbjct: 145 TGFMWGFGDREVWVTILEALTGARV 169
>UniRef50_A6Q8J5 Cluster: NADH-quinone oxidoreductase, chain D; n=2;
Epsilonproteobacteria|Rep: NADH-quinone oxidoreductase,
chain D - Sulfurovum sp. (strain NBC37-1)
Length = 547
Score = 70.9 bits (166), Expect = 3e-11
Identities = 44/147 (29%), Positives = 73/147 (49%), Gaps = 1/147 (0%)
Frame = +2
Query: 254 EVRNMILNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPY 433
E +LN+GP HPA+ G +RL + DGE + + DP IG + R E L+ K + A+
Sbjct: 177 ESSETVLNWGPTHPAS-GPIRLRIHCDGEEIISIDPDIGYVWRALEHLVTKKDFVGAIVA 235
Query: 434 FDRLDYVSMMCNEQCYSLAVEKLLNSMFLCGPSTSELCLRR*P-ATEHIMAVGTHALDVG 610
+RL ++ + + Y +AVE++ + + L + H M +G ++G
Sbjct: 236 VERLCFMDNINSMTGYCMAVEEIAGTEITEFAKWMRVLLGEVARVSSHFMGLGGFFNNLG 295
Query: 611 ALTPFFWLFEEREKMMEFYERVSGARM 691
T W + RE ++F E SGAR+
Sbjct: 296 LHTLGLWNMDVREYFLDFLESYSGARI 322
>UniRef50_Q9YC29 Cluster: NuoD homolog; n=4; Thermoprotei|Rep: NuoD
homolog - Aeropyrum pernix
Length = 414
Score = 70.9 bits (166), Expect = 3e-11
Identities = 45/139 (32%), Positives = 70/139 (50%), Gaps = 2/139 (1%)
Frame = +2
Query: 281 GPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSM 460
GPQHP + G +R+ + +DG+ + ADP IG +HR EKL E + + + +P F+R+ +
Sbjct: 35 GPQHPGS-GHMRITIRVDGDIIVEADPDIGYVHRTMEKLGEIRGWIKPIPLFERM-AIHD 92
Query: 461 MCNEQC-YSLAVEKLLN-SMFLCGPSTSELCLRR*PATEHIMAVGTHALDVGALTPFFWL 634
CN Y LAVEKL+ L L H+ + +G T + W
Sbjct: 93 ACNITLPYVLAVEKLMGVEPPLRAKYLRTLLCEINRIGAHLYGFAIFGVFLGHSTMYMWA 152
Query: 635 FEEREKMMEFYERVSGARM 691
+RE +E E ++GAR+
Sbjct: 153 MGDREVFIELAEALTGARL 171
>UniRef50_A0L9R4 Cluster: NADH dehydrogenase; n=2; Bacteria|Rep:
NADH dehydrogenase - Magnetococcus sp. (strain MC-1)
Length = 391
Score = 69.3 bits (162), Expect = 9e-11
Identities = 45/141 (31%), Positives = 68/141 (48%), Gaps = 3/141 (2%)
Frame = +2
Query: 281 GPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSM 460
GPQHP G + + L L G+ + A H+G LHRG EKL+E +T+ Q P R+
Sbjct: 34 GPQHPGITGNMSVELTLCGDEIVDAKTHVGYLHRGFEKLMERRTFIQCFPIVCRVCVPEP 93
Query: 461 MCNEQCYSLAVEKLLNSMFLCGPST---SELCLRR*PATEHIMAVGTHALDVGALTPFFW 631
NE CY+ AVE+L C L L ++M +G + G W
Sbjct: 94 DFNEYCYAAAVEELAG--IECPERARWIRTLILEMGRINSYLMYLGGQSGAFGMGVIGQW 151
Query: 632 LFEEREKMMEFYERVSGARMH 694
R+ M++ +E ++GAR++
Sbjct: 152 TTYIRDLMLDRFEELTGARIY 172
>UniRef50_A1RZ50 Cluster: NADH dehydrogenase; n=1; Thermofilum
pendens Hrk 5|Rep: NADH dehydrogenase - Thermofilum
pendens (strain Hrk 5)
Length = 404
Score = 68.9 bits (161), Expect = 1e-10
Identities = 45/153 (29%), Positives = 74/153 (48%), Gaps = 5/153 (3%)
Frame = +2
Query: 272 LNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDY 451
L GPQHP++ G +R ++ L G+ + + DP IG +HR EKL E + +A+P +RL
Sbjct: 25 LFIGPQHPSS-GHMRFIVRLQGDVIVSVDPDIGYVHRTMEKLAEGREAIKAIPLLERLTI 83
Query: 452 VSMMCNEQCYSLAVEKLLNSMFLCGPSTSELCLRR*PA-----TEHIMAVGTHALDVGAL 616
+ A+E+LL+ P L LR + H+ +G + +
Sbjct: 84 IDSHNATVGLVTAMERLLD----VEPPPRALYLRTLLSEINRIASHLYGMGIAGIMLNHS 139
Query: 617 TPFFWLFEEREKMMEFYERVSGARMHALHQTRG 715
T F W F +RE ++ E ++GAR+ + G
Sbjct: 140 TMFMWAFGDREVWLQLAEELTGARLTHTYSVPG 172
>UniRef50_Q0W3I1 Cluster: Ech hydrogenase, subunit E; n=1;
uncultured methanogenic archaeon RC-I|Rep: Ech
hydrogenase, subunit E - Uncultured methanogenic
archaeon RC-I
Length = 359
Score = 68.1 bits (159), Expect = 2e-10
Identities = 44/150 (29%), Positives = 71/150 (47%), Gaps = 2/150 (1%)
Frame = +2
Query: 272 LNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDY 451
+ FGPQHP +RL L LDGE V+ + G +HRG EK E+ Y +A +R+
Sbjct: 5 VQFGPQHPVWIEPIRLKLALDGELVKDVELEAGYVHRGLEKKFEW-DYNKAAYLAERVCG 63
Query: 452 VSMMCNEQCYSLAVEKLLN-SMFLCGPSTSELCLRR*PATEHIMAVGTHALDVGALTPFF 628
+ + C+ LAVE + + + L H++A+G +G F
Sbjct: 64 ICTQHHSTCFCLAVESTMKLEIPRRAAVIRNIMLELERLHSHLLAIGLTLEAIGFENLFM 123
Query: 629 WLFEEREKMMEFYERVSGAR-MHALHQTRG 715
F RE +++ +ER +G R +H ++ G
Sbjct: 124 LCFRNREIVLDVFERTTGNRVLHGINLVGG 153
>UniRef50_A7C1S4 Cluster: NADH-ubiquinone oxidoreductase subunit;
n=1; Beggiatoa sp. PS|Rep: NADH-ubiquinone
oxidoreductase subunit - Beggiatoa sp. PS
Length = 380
Score = 63.7 bits (148), Expect = 4e-09
Identities = 41/152 (26%), Positives = 71/152 (46%), Gaps = 4/152 (2%)
Frame = +2
Query: 272 LNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDY 451
L FGP HP G L + L G+ V G LHRG EK++E + + Q + R+
Sbjct: 19 LYFGPNHPGIEGNYALKVRLSGDEVVGVKADAGYLHRGFEKIMEERLWIQNVALVPRICV 78
Query: 452 VSMMCNEQCYSLAVEKLLNSMFLCGPSTSE----LCLRR*PATEHIMAVGTHALDVGALT 619
E+ Y+ AVE +L + + P ++ + L H+ G + G +
Sbjct: 79 PDPPPMEETYARAVE-MLGGLEV--PERAQWIRVMMLEMSRIAAHLFIAGGTSATTGQYS 135
Query: 620 PFFWLFEEREKMMEFYERVSGARMHALHQTRG 715
FW +R+ +++ +E ++GAR++ + T G
Sbjct: 136 NMFWGIADRDLILDLFEELTGARIYNMFITPG 167
>UniRef50_A1RZ40 Cluster: NADH-ubiquinone oxidoreductase, chain
49kDa; n=1; Thermofilum pendens Hrk 5|Rep:
NADH-ubiquinone oxidoreductase, chain 49kDa -
Thermofilum pendens (strain Hrk 5)
Length = 537
Score = 63.7 bits (148), Expect = 4e-09
Identities = 43/152 (28%), Positives = 70/152 (46%), Gaps = 1/152 (0%)
Frame = +2
Query: 263 NMILNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDR 442
++++ GP HPA L +DGE + A IG +HRG EK E +++ + + +R
Sbjct: 152 SVVVPVGPYHPAFKEPEYFSLVVDGERIVKAFVRIGFVHRGIEKAAESRSFFRDIFLVER 211
Query: 443 LDYVSMMCNEQCYSLAVEKLLN-SMFLCGPSTSELCLRR*PATEHIMAVGTHALDVGALT 619
+ + + C+ AVE+LLN + L H + +G G T
Sbjct: 212 ICGICSTSHAWCFVEAVERLLNMEVPRRAAYLRTLVAELERIHSHALWLGLVGYWTGFET 271
Query: 620 PFFWLFEEREKMMEFYERVSGARMHALHQTRG 715
F W++ RE +M+ E +SG R+H T G
Sbjct: 272 MFMWVWGLRETIMDLLEEISGNRVHKSFVTIG 303
>UniRef50_Q9V0S5 Cluster: NuoD NADH dehydrognease I, subunit D; n=4;
Thermococcaceae|Rep: NuoD NADH dehydrognease I, subunit
D - Pyrococcus abyssi
Length = 394
Score = 60.9 bits (141), Expect = 3e-08
Identities = 41/149 (27%), Positives = 70/149 (46%), Gaps = 1/149 (0%)
Frame = +2
Query: 272 LNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDY 451
L FGPQH A ++L++DG V A + G LHRG EKL EY+ + + R+
Sbjct: 31 LFFGPQHMATEN-FSIILKMDGNRVVKAIANPGFLHRGFEKLAEYRPWYTNIALLLRICV 89
Query: 452 VSMMCNEQCYSLAVEKLLN-SMFLCGPSTSELCLRR*PATEHIMAVGTHALDVGALTPFF 628
E YSLAV++++ + L + ++ + + +G T
Sbjct: 90 PESDVPEAIYSLAVDEIIGWEVPERAQWIRTTVLEMARVSAYLFWIMGLSFKLGVYTAGQ 149
Query: 629 WLFEEREKMMEFYERVSGARMHALHQTRG 715
W RE++M +E ++GAR++ ++ G
Sbjct: 150 WAAAYRERLMRLFEELTGARVYHIYTIPG 178
>UniRef50_UPI000155B933 Cluster: PREDICTED: similar to NADH
dehydrogenase (ubiquinone) Fe-S protein 2, 49kDa
(NADH-coenzyme Q reductase), partial; n=1;
Ornithorhynchus anatinus|Rep: PREDICTED: similar to NADH
dehydrogenase (ubiquinone) Fe-S protein 2, 49kDa
(NADH-coenzyme Q reductase), partial - Ornithorhynchus
anatinus
Length = 127
Score = 54.8 bits (126), Expect = 2e-06
Identities = 23/30 (76%), Positives = 27/30 (90%)
Frame = +2
Query: 251 KEVRNMILNFGPQHPAAHGVLRLVLELDGE 340
++V N+ LNFGPQHPAAHGVLRLV+EL GE
Sbjct: 97 RKVANVTLNFGPQHPAAHGVLRLVMELSGE 126
>UniRef50_Q8TY43 Cluster: Ni,Fe-hydrogenase III large subunit; n=1;
Methanopyrus kandleri|Rep: Ni,Fe-hydrogenase III large
subunit - Methanopyrus kandleri
Length = 409
Score = 53.6 bits (123), Expect = 5e-06
Identities = 41/156 (26%), Positives = 68/156 (43%), Gaps = 5/156 (3%)
Frame = +2
Query: 239 KTGRKEVRNMILNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYT 418
+TG E + + GP HP LR+ L + GE V +G HRG EK++E +
Sbjct: 18 ETGEIEPISHRVPVGPNHPILKEPLRIKLAVRGEEVVDCKVEMGYCHRGIEKIMEGMPWQ 77
Query: 419 QALPYFDRLDYVSMMCNEQCYSLAVEKLLNSMFLCGPSTSELCLR-----R*PATEHIMA 583
+A +R+ + + C+ VEKL P+ L LR H++A
Sbjct: 78 KAAFLAERVCGICSHAHNMCFIGGVEKLAEG----DPAPRGLFLRVLVQELDRIQSHLIA 133
Query: 584 VGTHALDVGALTPFFWLFEEREKMMEFYERVSGARM 691
+ + T F W RE++++ E ++G R+
Sbjct: 134 NAAYFYSIEHETMFVWNMNTRERVLDCIEEITGNRI 169
>UniRef50_O28445 Cluster: F420H2:quinone oxidoreductase, 45 kDa
subunit; n=2; Archaea|Rep: F420H2:quinone
oxidoreductase, 45 kDa subunit - Archaeoglobus fulgidus
Length = 413
Score = 53.6 bits (123), Expect = 5e-06
Identities = 44/143 (30%), Positives = 69/143 (48%), Gaps = 7/143 (4%)
Frame = +2
Query: 281 GPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSM 460
GPQHP + G +RL++ + G+ ++ P G +HR EKL E + Y Q +P +R +
Sbjct: 45 GPQHPGS-GHMRLIVRVRGDIIQEVIPDPGYVHRSMEKLAENRLYIQNIPLVERPAIMDA 103
Query: 461 MCNEQCYSLAVEKLLNSMFLCGPSTSELCLRR*PATEHIMAVGTHALD-------VGALT 619
Y A+E+ L+ + P ++ LR + VGTH D +G T
Sbjct: 104 PNFNLGYVRAIEEALD---IEVPERAKF-LR--TMLAELGRVGTHLYDAAILAVFLGHTT 157
Query: 620 PFFWLFEEREKMMEFYERVSGAR 688
F + F RE + E R++GAR
Sbjct: 158 GFMYPFGLRELICEALVRLTGAR 180
>UniRef50_A3DM94 Cluster: NADH-ubiquinone oxidoreductase, chain
49kDa; n=1; Staphylothermus marinus F1|Rep:
NADH-ubiquinone oxidoreductase, chain 49kDa -
Staphylothermus marinus (strain ATCC 43588 / DSM 3639 /
F1)
Length = 375
Score = 53.6 bits (123), Expect = 5e-06
Identities = 43/143 (30%), Positives = 67/143 (46%), Gaps = 5/143 (3%)
Frame = +2
Query: 281 GPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSM 460
GPQHP A G + L LDGE V D G LHRG EK++EY+ + L R+
Sbjct: 12 GPQHPGAPGNVGFKLLLDGERVLDIDLIPGFLHRGFEKMMEYRRWDMDLVMSARICVEDP 71
Query: 461 MCNEQCYSLAVEKLLNSMFLCGPSTSELCLRR*PA-----TEHIMAVGTHALDVGALTPF 625
E Y+ A+E++ F P +R A H++ + A + A
Sbjct: 72 DHIELTYTHAMEQI----FGIEPPEKAKYVRVIVAEFSRLASHLLWMMYFAGPIAARYAT 127
Query: 626 FWLFEEREKMMEFYERVSGARMH 694
W RE+++++++ VSG R++
Sbjct: 128 SWAIAAREEILKWFDYVSGHRIY 150
>UniRef50_A7I491 Cluster: NADH dehydrogenase; n=2; cellular
organisms|Rep: NADH dehydrogenase - Methanoregula boonei
(strain 6A8)
Length = 359
Score = 53.2 bits (122), Expect = 6e-06
Identities = 36/145 (24%), Positives = 67/145 (46%), Gaps = 1/145 (0%)
Frame = +2
Query: 260 RNMILNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFD 439
+ + + FGPQHP + L L L+ E V P IG +HRG EKL+E + Y + + +
Sbjct: 3 KQITVPFGPQHPVLPEPIHLDLVLEDERVVDVIPSIGYVHRGLEKLVEKREYPEYIYVAE 62
Query: 440 RLDYVSMMCNEQCYSLAVEKLLN-SMFLCGPSTSELCLRR*PATEHIMAVGTHALDVGAL 616
R+ + + Y+ VE ++ + + H++ +G A +G
Sbjct: 63 RICGICSYIHSNTYAECVEHIMKIEVPERAQYLRTIWTEYSRLHSHLLWLGLFADGMGFE 122
Query: 617 TPFFWLFEEREKMMEFYERVSGARM 691
+ F ++ RE +++ E +G R+
Sbjct: 123 SVFMNAWKLREHILDDLEATTGGRV 147
>UniRef50_Q8RDB4 Cluster: NADH:ubiquinone oxidoreductase 49 kD
subunit 7; n=17; cellular organisms|Rep: NADH:ubiquinone
oxidoreductase 49 kD subunit 7 - Thermoanaerobacter
tengcongensis
Length = 360
Score = 51.2 bits (117), Expect = 3e-05
Identities = 38/139 (27%), Positives = 61/139 (43%), Gaps = 1/139 (0%)
Frame = +2
Query: 278 FGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVS 457
FGPQHP + L L ++ E V A P G +HRG E L++ + + Q + D + +
Sbjct: 9 FGPQHPVLPEPIHLKLIVEDEKVVEAYPAFGYVHRGLELLVKKRDFNQMVYVVDHICGIC 68
Query: 458 MMCNEQCYSLAVEKLLN-SMFLCGPSTSELCLRR*PATEHIMAVGTHALDVGALTPFFWL 634
+ + Y AVEKL+ + + H++ G A G F
Sbjct: 69 SAIHGETYCQAVEKLIGIDVPERAKFLRVIWAEIHRIHSHLLWFGLLADAFGFENLFMLS 128
Query: 635 FEEREKMMEFYERVSGARM 691
+ REK+M+ E +G R+
Sbjct: 129 WRIREKVMDILEATAGNRV 147
>UniRef50_Q57935 Cluster: Uncharacterized protein MJ0515; n=9;
Euryarchaeota|Rep: Uncharacterized protein MJ0515 -
Methanococcus jannaschii
Length = 380
Score = 51.2 bits (117), Expect = 3e-05
Identities = 41/143 (28%), Positives = 67/143 (46%), Gaps = 5/143 (3%)
Frame = +2
Query: 281 GPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRL----D 448
GP HP LR+ L LDGE A+ +G +HRG EK++E K + + +R+
Sbjct: 11 GPIHPVLKEPLRIKLVLDGEKPVDAEIEMGYVHRGIEKIMEGKHCHKGIHLAERVCGICS 70
Query: 449 YVSMMCNEQCYS-LAVEKLLNSMFLCGPSTSELCLRR*PATEHIMAVGTHALDVGALTPF 625
YV M +C ++ ++ + T E L R H++A + L + T
Sbjct: 71 YVHTMTFAECIEHISKIEIPDKAKYLRVVTCE--LER--IHSHLIASAVYNLSIEHETLA 126
Query: 626 FWLFEEREKMMEFYERVSGARMH 694
WL RE +M+ E ++G R++
Sbjct: 127 MWLLNVREIIMDLMEMITGNRVN 149
>UniRef50_A1AUU6 Cluster: NADH dehydrogenase (Ubiquinone) precursor;
n=2; Pelobacter propionicus DSM 2379|Rep: NADH
dehydrogenase (Ubiquinone) precursor - Pelobacter
propionicus (strain DSM 2379)
Length = 409
Score = 50.0 bits (114), Expect = 6e-05
Identities = 33/139 (23%), Positives = 59/139 (42%), Gaps = 1/139 (0%)
Frame = +2
Query: 281 GPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSM 460
GPQHPA + + GE + +G HRG EK E ++Y Q L +R+ +
Sbjct: 9 GPQHPALKEPANFSITVTGEKIVTTSMRLGYNHRGIEKACEERSYLQCLYLLERICGICS 68
Query: 461 MCNEQCYSLAVEKLLNSMFLCGPS-TSELCLRR*PATEHIMAVGTHALDVGALTPFFWLF 637
+ Y AVE++ + L H++ +G ++G T + +
Sbjct: 69 HTHSTAYIQAVEEIAGLTIPPRANYIRSLVGELERIHSHLLWLGVAGHEIGFDTLLMYSW 128
Query: 638 EEREKMMEFYERVSGARMH 694
+RE +M+ + G R++
Sbjct: 129 RDRELVMDILAELGGNRVN 147
>UniRef50_A3DKH4 Cluster: NADH-ubiquinone oxidoreductase, chain
49kDa; n=1; Staphylothermus marinus F1|Rep:
NADH-ubiquinone oxidoreductase, chain 49kDa -
Staphylothermus marinus (strain ATCC 43588 / DSM 3639 /
F1)
Length = 406
Score = 50.0 bits (114), Expect = 6e-05
Identities = 37/138 (26%), Positives = 64/138 (46%), Gaps = 1/138 (0%)
Frame = +2
Query: 281 GPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSM 460
GPQHPA H + L DGE + + + G HRG EKL E T+ + + R+ +
Sbjct: 18 GPQHPALHEPVLLKAYADGEEIVNVEINTGYNHRGIEKLGEKNTFYRDIFIVARVCGICN 77
Query: 461 MCNEQCYSLAVEKLLN-SMFLCGPSTSELCLRR*PATEHIMAVGTHALDVGALTPFFWLF 637
+ + CY A+E++L+ L + H++ A +G + F +
Sbjct: 78 LVHANCYVRALEEILDMHPNERAKYLRVLAMEFERVHSHMLINAVMAEIIGFDSLFMNIM 137
Query: 638 EEREKMMEFYERVSGARM 691
+RE +M+ E ++G R+
Sbjct: 138 LDRENIMKAKEIITGNRV 155
>UniRef50_Q6AB32 Cluster: Putative NADH dehydrogenase; n=1;
Propionibacterium acnes|Rep: Putative NADH dehydrogenase
- Propionibacterium acnes
Length = 396
Score = 47.2 bits (107), Expect = 4e-04
Identities = 36/147 (24%), Positives = 61/147 (41%), Gaps = 4/147 (2%)
Frame = +2
Query: 272 LNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDY 451
L+ G HP G++ + +D + + ++ ++G LHRG EKL E + Y Q R D+
Sbjct: 43 LDLGHLHPTRSGLVTIATTVDDDVIISSQVNVGTLHRGDEKLFEVRDYRQIPMLASRHDW 102
Query: 452 VSMMCNEQCYSLAVEKLLNSMFLCGPSTSELCLRR*P-ATEH---IMAVGTHALDVGALT 619
+ E + A+E + + L T H + VG H D G
Sbjct: 103 TAPFIGETGAAHAIEDAMGITIPTRVAWIRTLLAEFSRITSHFTFLSWVGHHCDDAGLEN 162
Query: 620 PFFWLFEEREKMMEFYERVSGARMHAL 700
E ++ ++R SG R+H +
Sbjct: 163 AIATAIENARRI---WQRCSGNRIHPM 186
>UniRef50_P16431 Cluster: Formate hydrogenlyase subunit 5 precursor;
n=50; Bacteria|Rep: Formate hydrogenlyase subunit 5
precursor - Escherichia coli (strain K12)
Length = 569
Score = 46.4 bits (105), Expect = 7e-04
Identities = 39/148 (26%), Positives = 66/148 (44%), Gaps = 5/148 (3%)
Frame = +2
Query: 260 RNMILNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKT-YTQALPYF 436
+N ++ GP H + L +DGE + AD + +HRG EKL E + Y +
Sbjct: 178 KNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLS 237
Query: 437 DRLDYVSMMCNEQCYSLAVEKLLNSMFLCGPSTSE----LCLRR*PATEHIMAVGTHALD 604
DR+ + + Y+ +VE N+M + P ++ + L H++ +G
Sbjct: 238 DRVCGICGFAHSTAYTTSVE---NAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHF 294
Query: 605 VGALTPFFWLFEEREKMMEFYERVSGAR 688
G + F F RE M+ E ++GAR
Sbjct: 295 TGFDSGFMQFFRVRETSMKMAEILTGAR 322
>UniRef50_Q8U0Z6 Cluster: Mbh12 membrane bound hydrogenase alpha;
n=4; Thermococcaceae|Rep: Mbh12 membrane bound
hydrogenase alpha - Pyrococcus furiosus
Length = 427
Score = 46.0 bits (104), Expect = 0.001
Identities = 37/145 (25%), Positives = 64/145 (44%), Gaps = 6/145 (4%)
Frame = +2
Query: 278 FGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVS 457
FGP HP + ++ LDGE + D +G RG + + + Y Q + +R+ +
Sbjct: 12 FGPIHPGLEEPEKFIITLDGERIVNVDVKLGYNLRGVQWIGMRRNYVQIMYLAERMCGIC 71
Query: 458 MMCNEQCYSLAVEKLLNSMFLCGPSTSELC------LRR*PATEHIMAVGTHALDVGALT 619
+ Y AVE++ + P +E L R H++ +G D+G T
Sbjct: 72 SFSHNHTYVRAVEEMAG---IEVPERAEYIRVIVGELER--IHSHLLNLGVVGHDIGYDT 126
Query: 620 PFFWLFEEREKMMEFYERVSGARMH 694
+ RE++M+ E VSG R++
Sbjct: 127 VLHLTWLARERVMDVLEAVSGNRVN 151
>UniRef50_P77329 Cluster: Hydrogenase-4 component G; n=19;
Bacteria|Rep: Hydrogenase-4 component G - Escherichia
coli (strain K12)
Length = 555
Score = 44.8 bits (101), Expect = 0.002
Identities = 38/142 (26%), Positives = 60/142 (42%), Gaps = 2/142 (1%)
Frame = +2
Query: 269 ILNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKT-YTQALPYFDRL 445
++ GP H + L +DGE + AD + +HRG EKL E + Y + DR+
Sbjct: 183 VIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRV 242
Query: 446 DYVSMMCNEQCYSLAVEKLLN-SMFLCGPSTSELCLRR*PATEHIMAVGTHALDVGALTP 622
+ + Y+ +VE L + + + L H++ +G VG T
Sbjct: 243 CGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFDTG 302
Query: 623 FFWLFEEREKMMEFYERVSGAR 688
F F REK M E + G+R
Sbjct: 303 FMQFFRVREKSMTMAELLIGSR 324
>UniRef50_P31895 Cluster: Carbon monoxide-induced hydrogenase; n=9;
Bacteria|Rep: Carbon monoxide-induced hydrogenase -
Rhodospirillum rubrum
Length = 361
Score = 44.4 bits (100), Expect = 0.003
Identities = 39/140 (27%), Positives = 59/140 (42%), Gaps = 3/140 (2%)
Frame = +2
Query: 281 GPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSM 460
GP H A + +E+DGE V + D G +HRG E L + Q + +R+ +
Sbjct: 9 GPLHVALEEPMYFRIEVDGEKVVSVDITAGHVHRGIEYLATKRNIYQNIVLTERVCSLCS 68
Query: 461 MCNEQCYSLAVEKLLNSMFLCGPSTSELCL---RR*PATEHIMAVGTHALDVGALTPFFW 631
+ Q Y +A+E + + P L + H+ V A VG + F
Sbjct: 69 NSHPQTYCMALESITG--MVVPPRAQYLRVIADETKRVASHMFNVAILAHIVGFDSLFMH 126
Query: 632 LFEEREKMMEFYERVSGARM 691
+ E RE M + E V G RM
Sbjct: 127 VMEAREIMQDTKEAVFGNRM 146
>UniRef50_A6DBV4 Cluster: Ech hydrogenase, subunit EchE, putative;
n=1; Caminibacter mediatlanticus TB-2|Rep: Ech
hydrogenase, subunit EchE, putative - Caminibacter
mediatlanticus TB-2
Length = 363
Score = 44.0 bits (99), Expect = 0.004
Identities = 41/147 (27%), Positives = 60/147 (40%), Gaps = 5/147 (3%)
Frame = +2
Query: 266 MILNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYK-TYTQALPYFDR 442
+I+ FG QH A + + + E + D +G +HRG EK K +T R
Sbjct: 7 VIVPFGSQHIALPEPVSFLFTTENEVITDVDVDVGYVHRGIEKAAITKFEFTNVAYLLTR 66
Query: 443 LDYVSMMCNEQCYSLAVEKLLNSMFLCGPSTSE----LCLRR*PATEHIMAVGTHALDVG 610
+ + + Y +EKLL + P +E L HI+A G A VG
Sbjct: 67 ICGFCSITHASGYHHGIEKLLGAEV---PKRAEYIRMLVTELDRIHSHILANGHVAEVVG 123
Query: 611 ALTPFFWLFEEREKMMEFYERVSGARM 691
F REK ME E ++G R+
Sbjct: 124 YENLFMQSVRYREKAMELLELITGNRI 150
>UniRef50_Q2FTW4 Cluster: NADH dehydrogenase; n=2;
Methanomicrobiales|Rep: NADH dehydrogenase -
Methanospirillum hungatei (strain JF-1 / DSM 864)
Length = 409
Score = 44.0 bits (99), Expect = 0.004
Identities = 33/142 (23%), Positives = 64/142 (45%), Gaps = 1/142 (0%)
Frame = +2
Query: 272 LNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDY 451
L GP HPA + +++GE + D G HRG E + + Q L DR+
Sbjct: 10 LPIGPIHPALKEPINFTFQMNGEVIEKVDFAPGRAHRGIEWMGMRRNPVQILHLCDRICG 69
Query: 452 VSMMCNEQCYSLAVEKLLNSMFLCGPSTSELCLRR*PATE-HIMAVGTHALDVGALTPFF 628
+ + + ++ AVE++ + + + HI+ G A ++G T F+
Sbjct: 70 ICGVHHALVFAQAVEQIADIEVPDRAYYVRTIIAEFERIQSHILWAGVAAHELGFDTLFY 129
Query: 629 WLFEEREKMMEFYERVSGARMH 694
++ RE+ ++ E ++G R++
Sbjct: 130 LAWQIREESVDVIEYITGNRVN 151
>UniRef50_Q4X2T6 Cluster: Putative uncharacterized protein; n=1;
Plasmodium chabaudi|Rep: Putative uncharacterized
protein - Plasmodium chabaudi
Length = 152
Score = 43.2 bits (97), Expect = 0.007
Identities = 20/40 (50%), Positives = 24/40 (60%)
Frame = +1
Query: 346 PCSRSSHRSPAPWY*KTDRIQDIHPSPAVLRPSGLRVHDV 465
P R +HR A + K R QD+HP A+ P GLRVHDV
Sbjct: 113 PACRPAHRPVASRHRKAGRAQDLHPGAALHGPPGLRVHDV 152
>UniRef50_A1RWL3 Cluster: NADH dehydrogenase (Ubiquinone), 30 kDa
subunit; n=1; Thermofilum pendens Hrk 5|Rep: NADH
dehydrogenase (Ubiquinone), 30 kDa subunit - Thermofilum
pendens (strain Hrk 5)
Length = 567
Score = 42.7 bits (96), Expect = 0.009
Identities = 44/149 (29%), Positives = 64/149 (42%), Gaps = 8/149 (5%)
Frame = +2
Query: 266 MILNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYK-TYTQALPYFDR 442
M + GP H A + + LDGE V D + +HRG EKL E + TY Q +R
Sbjct: 179 MQVPIGPVHAVADEPGQFRVFLDGEKVVDVDYRMFYVHRGIEKLAESRLTYNQVPFIAER 238
Query: 443 LDYVSMMCNEQCYSLAVEKLLNSMFLCGPSTSELCLRR*PATEHIMAVGTHALDVGA--- 613
+ + + Y AVE+ L G E L + + +H L++G
Sbjct: 239 ICGICGYAHSCAYCQAVEQAL------GIEVPERALYIRTLMLEVERLHSHLLNLGLACH 292
Query: 614 LTPFFW----LFEEREKMMEFYERVSGAR 688
L F W F+ REK+M E ++G R
Sbjct: 293 LAGFDWGFMAFFKAREKVMYMAELLTGGR 321
>UniRef50_Q0W6T4 Cluster: [NiFe]-hydrogenase, large subunit; n=1;
uncultured methanogenic archaeon RC-I|Rep:
[NiFe]-hydrogenase, large subunit - Uncultured
methanogenic archaeon RC-I
Length = 486
Score = 41.9 bits (94), Expect = 0.016
Identities = 37/143 (25%), Positives = 61/143 (42%), Gaps = 2/143 (1%)
Frame = +2
Query: 278 FGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVS 457
+GP HPA + ++ E V+ AD +G HR KL+E + Y + + +R+ +
Sbjct: 116 YGPYHPAFIESNYFKMAVEDEVVKKADLKLGFNHRSIIKLMERRDYYKDIYLAERVCGLC 175
Query: 458 MMCNEQCYSLAVEKLLN-SMFLCGPSTSELCLRR*PATEHIMAVGTHALDVGALTPFFWL 634
+ + LAVE + ++ + H+MA+G VG T
Sbjct: 176 NAHHALSFCLAVENIGQVTVPKRADIIRTMICEMERIQSHLMAIGILGDLVGYKTMLMQF 235
Query: 635 FEEREKMMEFYERVSGARM-HAL 700
RE + + E VSG R+ H L
Sbjct: 236 LRIREDIQDSLELVSGQRVTHGL 258
>UniRef50_A3DNE9 Cluster: NADH dehydrogenase (Ubiquinone), 30 kDa
subunit; n=1; Staphylothermus marinus F1|Rep: NADH
dehydrogenase (Ubiquinone), 30 kDa subunit -
Staphylothermus marinus (strain ATCC 43588 / DSM 3639 /
F1)
Length = 548
Score = 41.5 bits (93), Expect = 0.021
Identities = 39/156 (25%), Positives = 69/156 (44%), Gaps = 6/156 (3%)
Frame = +2
Query: 239 KTGRKEVRNMILNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYT 418
K R+ + GP HPA H L ++GE V + + +HRG EKL E +
Sbjct: 158 KVPRQPPTGQRIPIGPYHPALHEPEYFELYVEGEKVVDVEYNGFHVHRGIEKLAEAPRFN 217
Query: 419 -QALPYF-DRLDYVSMMCNEQCYSLAVEKLLNSMFLCGPSTSE----LCLRR*PATEHIM 580
Q +P+ +R+ + + Y+++VE+ + P +E + L H++
Sbjct: 218 YQKIPFLAERICGICGFVHSVSYTMSVERAAK---IDVPERAEYIRSIILEIERLHSHLL 274
Query: 581 AVGTHALDVGALTPFFWLFEEREKMMEFYERVSGAR 688
+G +G F + REK+M E ++G+R
Sbjct: 275 WIGVVCHLLGYDAGFMHTWRIREKVMVLAELLTGSR 310
>UniRef50_A3CUR5 Cluster: NADH dehydrogenase; n=3;
Methanomicrobiales|Rep: NADH dehydrogenase -
Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498
/ JR1)
Length = 362
Score = 41.5 bits (93), Expect = 0.021
Identities = 28/156 (17%), Positives = 71/156 (45%), Gaps = 1/156 (0%)
Frame = +2
Query: 251 KEVRNMILNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALP 430
K+ ++ + GP HP +RL E GE V + +G + +G E+++ + + + +
Sbjct: 2 KKTVDVSIPLGPMHPCWKEPVRLKCETAGERVLKTELELGYMKKGIERIMRGRPWQEVMF 61
Query: 431 YFDRLDYVSMMCNEQCYSLAVEKLLNSMFLCGPSTSELCLRR*P-ATEHIMAVGTHALDV 607
+R+ + + + + +E++ + + + + HI+A ++ +
Sbjct: 62 LAERVCGICSVVHNMVFIETMEEISDIPVPPRAAYLRVVVNELDRMASHILANFSYCYTI 121
Query: 608 GALTPFFWLFEEREKMMEFYERVSGARMHALHQTRG 715
T +L RE +++ ER++G+R++ + G
Sbjct: 122 EHETLAMYLLNIRETVLDNLERITGSRINTAYMIPG 157
>UniRef50_Q9UYN4 Cluster: Hydrogenase 4, component G or formate
hydrogen lyase, subunit 5; n=1; Pyrococcus abyssi|Rep:
Hydrogenase 4, component G or formate hydrogen lyase,
subunit 5 - Pyrococcus abyssi
Length = 588
Score = 39.9 bits (89), Expect = 0.063
Identities = 39/138 (28%), Positives = 59/138 (42%), Gaps = 2/138 (1%)
Frame = +2
Query: 281 GPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYK-TYTQALPYFDRLDYVS 457
GP H L + GE + D HRG EK+ E + TY Q L +R+ +
Sbjct: 202 GPLHMGIEEPAHFKLFVKGEEIVDVDYRGFYSHRGIEKIGEGRLTYNQVLFLAERICGIC 261
Query: 458 MMCNEQCYSLAVEKLLN-SMFLCGPSTSELCLRR*PATEHIMAVGTHALDVGALTPFFWL 634
+ Y++A+E+L + + L L H++ VG A VG T F
Sbjct: 262 GYQHSVSYAMAIERLADVEIPDRARYIRTLLLELERIHNHLLWVGIAAHLVGYDTGFMHA 321
Query: 635 FEEREKMMEFYERVSGAR 688
+ RE +M ER++G R
Sbjct: 322 WRIREPVMWLMERLTGNR 339
>UniRef50_A1ASR5 Cluster: NADH dehydrogenase (Ubiquinone), 30 kDa
subunit; n=1; Pelobacter propionicus DSM 2379|Rep: NADH
dehydrogenase (Ubiquinone), 30 kDa subunit - Pelobacter
propionicus (strain DSM 2379)
Length = 557
Score = 39.1 bits (87), Expect = 0.11
Identities = 41/142 (28%), Positives = 59/142 (41%), Gaps = 5/142 (3%)
Frame = +2
Query: 278 FGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYF-DRLDYV 454
FGP HP L +DGE VR + ++HRG EKL E +P +R+ +
Sbjct: 175 FGPFHPTLDEPEHFRLYVDGEFVRGCEYRGFMVHRGIEKLSESVLGYNDVPMMAERICGI 234
Query: 455 SMMCNEQCYSLAVEKLLNSMFLCGPSTSE----LCLRR*PATEHIMAVGTHALDVGALTP 622
+ + AVE N + P +E + L H M VG VG T
Sbjct: 235 CGCVHSLAFCQAVE---NGAGVIVPPRAEFIRTIMLEIERLHSHPMWVGLACHLVGFDTL 291
Query: 623 FFWLFEEREKMMEFYERVSGAR 688
F + RE +M E+++G R
Sbjct: 292 FMQAWRIREPIMWLAEKITGNR 313
>UniRef50_Q24ST8 Cluster: Formate hydrogenlyase subunit 5; n=2;
Desulfitobacterium hafniense|Rep: Formate hydrogenlyase
subunit 5 - Desulfitobacterium hafniense (strain Y51)
Length = 554
Score = 37.5 bits (83), Expect = 0.33
Identities = 24/74 (32%), Positives = 33/74 (44%)
Frame = +2
Query: 281 GPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSM 460
GP H + GETV D + H+G EKL+E K + L +R+ V
Sbjct: 194 GPVHAGIIEPGHFRFQTIGETVLHLDAQLFYTHKGIEKLLEGKDLEEGLKIVERVCGVCA 253
Query: 461 MCNEQCYSLAVEKL 502
+ + Y AVEKL
Sbjct: 254 VSHALAYCEAVEKL 267
>UniRef50_Q0W2B9 Cluster: Hydrogenase, large subunit-like protein;
n=1; uncultured methanogenic archaeon RC-I|Rep:
Hydrogenase, large subunit-like protein - Uncultured
methanogenic archaeon RC-I
Length = 524
Score = 37.5 bits (83), Expect = 0.33
Identities = 33/138 (23%), Positives = 57/138 (41%), Gaps = 1/138 (0%)
Frame = +2
Query: 281 GPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSM 460
GP H + GE V + +G +H+G EK+ E TY + + +R +
Sbjct: 173 GPVHAGVIEPGHFRFSVAGEPVLMLEIRMGYVHKGIEKISESMTYDKGVFLSERTSGDNG 232
Query: 461 MCNEQCYSLAVEKLLN-SMFLCGPSTSELCLRR*PATEHIMAVGTHALDVGALTPFFWLF 637
M + Y AVE+L + + L H+ VG +LD +
Sbjct: 233 MAHSTAYCQAVEQLAGIEVPDRARYIRTVFLEMERIYNHLGDVGGISLDTAYNVGAQHAY 292
Query: 638 EEREKMMEFYERVSGARM 691
RE+M++ E ++G+R+
Sbjct: 293 ILRERMLQLNECITGSRL 310
>UniRef50_Q0LPD5 Cluster: NADH-ubiquinone oxidoreductase, chain
49kDa; n=1; Herpetosiphon aurantiacus ATCC 23779|Rep:
NADH-ubiquinone oxidoreductase, chain 49kDa -
Herpetosiphon aurantiacus ATCC 23779
Length = 368
Score = 36.7 bits (81), Expect = 0.59
Identities = 21/79 (26%), Positives = 36/79 (45%)
Frame = +2
Query: 269 ILNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLD 448
+L GP HP +R+VL ++GE + + G +RG + + T Q L +
Sbjct: 14 VLPLGPFHPDWQTPMRMVLRVEGEQIADVEFRDGYTNRGISERLTRTTIPQGLHLVSHIC 73
Query: 449 YVSMMCNEQCYSLAVEKLL 505
+ + LA+E+LL
Sbjct: 74 AADSHAHSLGFCLALEQLL 92
>UniRef50_Q0BPG8 Cluster: Formate hydrogenlyase subunit 5; n=1;
Granulibacter bethesdensis CGDNIH1|Rep: Formate
hydrogenlyase subunit 5 - Granulobacter bethesdensis
(strain ATCC BAA-1260 / CGDNIH1)
Length = 517
Score = 36.3 bits (80), Expect = 0.77
Identities = 21/77 (27%), Positives = 35/77 (45%)
Frame = +2
Query: 275 NFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYV 454
+ GP HP +L L L G +R A+ +G HRG + L+ K A+ R+
Sbjct: 162 SIGPVHPLMREPAQLRLHLHGTLIRQAEWRLGYTHRGIQWLMRGKPLRDAIRIAARITGD 221
Query: 455 SMMCNEQCYSLAVEKLL 505
+ + + ++ A E L
Sbjct: 222 AALAHGLAFARAAEAAL 238
>UniRef50_Q1PZL4 Cluster: Similar to membrane-bound
[NiFe]-hydrogenase-3, large subunit; n=1; Candidatus
Kuenenia stuttgartiensis|Rep: Similar to membrane-bound
[NiFe]-hydrogenase-3, large subunit - Candidatus
Kuenenia stuttgartiensis
Length = 531
Score = 35.1 bits (77), Expect = 1.8
Identities = 18/56 (32%), Positives = 30/56 (53%)
Frame = +2
Query: 335 GETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKL 502
G+++ D + H+GTEK+ E YT+AL +R+ V + Y A+EK+
Sbjct: 197 GDSIFYLDAKLFFTHKGTEKIFETMPYTKALFLAERICGVCAASHATGYCQAIEKV 252
>UniRef50_A0UXP1 Cluster: NADH dehydrogenase; n=1; Clostridium
cellulolyticum H10|Rep: NADH dehydrogenase - Clostridium
cellulolyticum H10
Length = 530
Score = 34.7 bits (76), Expect = 2.4
Identities = 20/74 (27%), Positives = 32/74 (43%)
Frame = +2
Query: 281 GPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSM 460
GP H + GE + + + +HRG EKL E + Y + L + +R+
Sbjct: 177 GPVHAGIIEPGHFRFSVAGEPIINLEAKLYYVHRGLEKLCENQHYMKVLLFSERISGDET 236
Query: 461 MCNEQCYSLAVEKL 502
N + A+EKL
Sbjct: 237 FTNSLAFCQAIEKL 250
>UniRef50_Q6IG62 Cluster: HDC07157; n=1; Drosophila
melanogaster|Rep: HDC07157 - Drosophila melanogaster
(Fruit fly)
Length = 88
Score = 34.3 bits (75), Expect = 3.1
Identities = 25/72 (34%), Positives = 32/72 (44%)
Frame = +2
Query: 464 CNEQCYSLAVEKLLNSMFLCGPSTSELCLRR*PATEHIMAVGTHALDVGALTPFFWLFEE 643
C ++C S A KLL S + S LR P +MAVG ALD G L +W+ +
Sbjct: 10 CTDRCSSAA--KLL-SRSVALQSERSASLRLMPDAPWLMAVGYWALDTGILATIYWILDT 66
Query: 644 REKMMEFYERVS 679
M VS
Sbjct: 67 GYHWMHTIRLVS 78
>UniRef50_Q4DZG8 Cluster: Putative uncharacterized protein; n=2;
Trypanosoma cruzi|Rep: Putative uncharacterized protein -
Trypanosoma cruzi
Length = 1951
Score = 33.5 bits (73), Expect = 5.5
Identities = 12/39 (30%), Positives = 24/39 (61%)
Frame = -2
Query: 413 MSCIRSVFQYHGAGDLCEDLLHGLSLRPVPVRDAAPRER 297
+ C+ + F HG+G + D+L + +RP+ ++ A R+R
Sbjct: 1039 VECVLASFSIHGSGPIFVDVLFDVEIRPIRPQEGADRKR 1077
>UniRef50_Q10884 Cluster: POSSIBLE FORMATE HYDROGENASE HYCE; n=10;
Actinomycetales|Rep: POSSIBLE FORMATE HYDROGENASE HYCE -
Mycobacterium tuberculosis
Length = 492
Score = 33.1 bits (72), Expect = 7.2
Identities = 20/75 (26%), Positives = 32/75 (42%)
Frame = +2
Query: 281 GPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSM 460
GP H + GET+ + +HRG EKL + T A+ +R+ +
Sbjct: 148 GPVHAGLIEPGHFRFSVAGETIVRLKARLWFVHRGIEKLFHGRPATAAVDLAERISGDTS 207
Query: 461 MCNEQCYSLAVEKLL 505
+ +SLA+E L
Sbjct: 208 AAHALAHSLAIEDAL 222
>UniRef50_Q3WCX1 Cluster: Cell divisionFtsK/SpoIIIE protein; n=1;
Frankia sp. EAN1pec|Rep: Cell divisionFtsK/SpoIIIE
protein - Frankia sp. EAN1pec
Length = 895
Score = 33.1 bits (72), Expect = 7.2
Identities = 23/65 (35%), Positives = 28/65 (43%)
Frame = -2
Query: 446 PDGRSTAGLGCMSCIRSVFQYHGAGDLCEDLLHGLSLRPVPVRDAAPRERLDAGARSSGS 267
P G T G G + + + A CE L L+ PVRD PRER A AR+
Sbjct: 623 PAGEPTGGPGTSAGLDAEISGPAAAAWCEQLARALA----PVRDPGPRERGPASARAETR 678
Query: 266 CCVLL 252
LL
Sbjct: 679 LLELL 683
>UniRef50_Q05V81 Cluster: ABC-type sugar transport system
periplasmic component-like protein; n=1; Synechococcus
sp. RS9916|Rep: ABC-type sugar transport system
periplasmic component-like protein - Synechococcus sp.
RS9916
Length = 424
Score = 33.1 bits (72), Expect = 7.2
Identities = 17/63 (26%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Frame = +2
Query: 251 KEVRNMILNFGPQ---HPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQ 421
K+V+ ++ +F P HP ++ L LV E+D +T P + + + T ++ + TQ
Sbjct: 60 KDVQELLQDFDPGLRLHPTSYSELNLVREIDRQTSSGLGPDLIITNGNTALALQEQELTQ 119
Query: 422 ALP 430
+P
Sbjct: 120 PVP 122
>UniRef50_Q09CD1 Cluster: Tetratricopeptide repeat domain protein;
n=2; Cystobacterineae|Rep: Tetratricopeptide repeat
domain protein - Stigmatella aurantiaca DW4/3-1
Length = 1258
Score = 32.7 bits (71), Expect = 9.5
Identities = 17/39 (43%), Positives = 28/39 (71%), Gaps = 2/39 (5%)
Frame = +1
Query: 451 RVHDVQRAVLQSGRREAAELDVPLRAKY--IRTLFAEIT 561
R+H +Q+A+ QSG +E AE+++P A+ +RTL A+ T
Sbjct: 712 RIHIIQKALEQSGIQEIAEVNIPAGAQVLALRTLKADGT 750
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 741,727,478
Number of Sequences: 1657284
Number of extensions: 15385659
Number of successful extensions: 41317
Number of sequences better than 10.0: 92
Number of HSP's better than 10.0 without gapping: 39829
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41214
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 59265488880
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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