Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0311
         (732 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch...    27   3.6  
SPAC19B12.05c |fcp1||CTD phosphatase Fcp1 |Schizosaccharomyces p...    26   4.8  
SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2 |Schizosacch...    26   4.8  
SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit ...    26   4.8  
SPAC1B2.02c |ugo1||mitochondrial fusion and transport protein Ug...    26   6.4  
SPCC584.14 |mug160||conserved eukaryotic protein|Schizosaccharom...    26   6.4  
SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces po...    26   6.4  
SPAC1093.03 |||inositol polyphosphate phosphatase |Schizosacchar...    26   6.4  
SPBC4.06 |||acid phosphatase |Schizosaccharomyces pombe|chr 2|||...    25   8.4  

>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
            Mok12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2352

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = -3

Query: 400  DQFFSTTVQETYVRICCTDCLSVQFQYETQHPVSGWML 287
            D+  S TV E+Y +I C    + + Q    H + GW L
Sbjct: 1901 DKEKSCTVSESYKQIDCDTYEATRLQKLLLHSIGGWPL 1938


>SPAC19B12.05c |fcp1||CTD phosphatase Fcp1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 723

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +3

Query: 120 QRDGHRWFPDPDFVKQFEGPV 182
           Q DG   + D +FV+QFE PV
Sbjct: 50  QEDGSEVYVDREFVEQFECPV 70


>SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 12/42 (28%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = -1

Query: 231 CYKEQVSMIWSTHQDT*LALQIVSQSLDQGTNGAHLFG-SSH 109
           CY EQ   + + H+DT   +++V+ +L+  +     F  +SH
Sbjct: 578 CYLEQCLRLNTLHEDTTFPMRVVNYALEYSSKALDKFAENSH 619


>SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit
           Sfc4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1006

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
 Frame = +2

Query: 575 IMAVGTHALDV-GALTPFFWLFEEREKMMEFYERVSGARMHALHQTRGFAD 724
           ++A   +A D  GALTP  W+F   +   + Y   S         +R F D
Sbjct: 746 MLACSMYARDPQGALTPLRWVFTTFQFRQDTYRLFSAVLSQGYECSRAFVD 796


>SPAC1B2.02c |ugo1||mitochondrial fusion and transport protein
           Ugo1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 421

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -3

Query: 202 VDSSGYMTGPSNCFTKS 152
           VD+SGY+T PSN   +S
Sbjct: 130 VDASGYVTDPSNLIERS 146


>SPCC584.14 |mug160||conserved eukaryotic
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 431

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +3

Query: 528 QVHQNSVCGDNPLLNTSW 581
           Q+  NSV G++PL N +W
Sbjct: 68  QIFANSVAGNSPLQNEAW 85


>SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 472

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +3

Query: 309 CCVSYWNWTER 341
           CC+S W+WT R
Sbjct: 157 CCLSNWSWTHR 167


>SPAC1093.03 |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 832

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = -3

Query: 400 DQFFSTTVQETYVRICCTDCL 338
           D+FF  T Q   VR  C DCL
Sbjct: 414 DRFFPGTFQTGVVRTNCVDCL 434


>SPBC4.06 |||acid phosphatase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 462

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 9/26 (34%), Positives = 18/26 (69%)
 Frame = +3

Query: 177 PVMYPDESTKSLKPVPYNSIIKPAEK 254
           P+    ++ ++LKPV Y+++ KP +K
Sbjct: 437 PLSIFKDTVRALKPVEYHTMCKPVKK 462


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,997,605
Number of Sequences: 5004
Number of extensions: 61665
Number of successful extensions: 171
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)