Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0311
         (732 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0813 - 6405897-6405961,6406328-6406901                           29   2.9  
05_03_0394 - 13440871-13441098,13441197-13441394,13441491-134415...    29   2.9  
06_03_1000 - 26778993-26779478                                         28   6.6  
04_01_0240 + 3137859-3138461                                           28   6.6  
04_04_0905 - 29290998-29291486                                         28   8.8  

>07_01_0813 - 6405897-6405961,6406328-6406901
          Length = 212

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 12/28 (42%), Positives = 13/28 (46%)
 Frame = +3

Query: 552 GDNPLLNTSWRSARTRSTWGRSLPSSGC 635
           G   L    WR A   + WGR L  SGC
Sbjct: 76  GRTQLGTAGWRRAVAEAAWGRGLAPSGC 103


>05_03_0394 -
           13440871-13441098,13441197-13441394,13441491-13441594,
           13441687-13442551,13442677-13443045,13443372-13443533,
           13443838-13444056,13444138-13444656,13444742-13444819,
           13446041-13446163
          Length = 954

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 24/104 (23%), Positives = 43/104 (41%), Gaps = 3/104 (2%)
 Frame = +3

Query: 57  PNFGQKSVLLKNIPAVHNVNSQRDGHRWFPDPDFVKQFE-GPVMYPDESTKSLKPVPYNS 233
           P  G+K  +    P+    ++ +   +W P   +  + +  PV  P E  +   P+ Y +
Sbjct: 19  PRRGEKRRMRGRTPSPEPASAPQTNGKWHPHESYRPEIDDAPVFTPTEE-EFKDPIRYIT 77

Query: 234 IIKPAEKKYAT*S*TSGPSIQPLTGCC-VSYWNWTE-RQSVQQI 359
            I+P  +KY         S +P       ++W  TE    VQQ+
Sbjct: 78  SIRPQAEKYGICRIVPPSSWRPPCSLKEKNFWECTEFNTRVQQV 121


>06_03_1000 - 26778993-26779478
          Length = 161

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = -2

Query: 347 GLSLRPVPVRDAAPRERLDAGARSSGSCC 261
           G +LRP  V   APR+   AG R +  CC
Sbjct: 83  GSALRPATVCPPAPRKPRPAGKRMTKRCC 111


>04_01_0240 + 3137859-3138461
          Length = 200

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 21/60 (35%), Positives = 25/60 (41%)
 Frame = -3

Query: 217 GFNDLVDSSGYMTGPSNCFTKSGSGNQRCPSLWEFTL*TAGMFFNKTDFWPKLGDFRNKT 38
           GF DL  SS   T  S C     S N     LW+ T      F  K  F   L D++NK+
Sbjct: 63  GFVDLTCSSS-KTDFSKCKPGQMSYNHSSVPLWDRTTNELASFATKFTFKIVLSDYKNKS 121


>04_04_0905 - 29290998-29291486
          Length = 162

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
 Frame = +2

Query: 527 PSTSELCLRR*PATEHIMAVG--THALDVGAL 616
           P+T  +CL R  AT+ +  +G  THA  +G +
Sbjct: 98  PATCRVCLERLEATDEVRRLGNCTHAFHIGCI 129


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,474,919
Number of Sequences: 37544
Number of extensions: 447079
Number of successful extensions: 1073
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1042
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1073
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1921741964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)