Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0311
         (732 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_53961| Best HMM Match : Complex1_49kDa (HMM E-Value=0)             198   4e-51
SB_42659| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.1  
SB_435| Best HMM Match : zf-CCHC (HMM E-Value=2)                       28   6.8  
SB_57924| Best HMM Match : PG_binding_1 (HMM E-Value=3.5)              28   6.8  
SB_2279| Best HMM Match : PG_binding_1 (HMM E-Value=3.5)               28   6.8  
SB_51840| Best HMM Match : WD40 (HMM E-Value=8.3e-07)                  28   9.0  
SB_48269| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.0  

>SB_53961| Best HMM Match : Complex1_49kDa (HMM E-Value=0)
          Length = 417

 Score =  198 bits (483), Expect = 4e-51
 Identities = 100/137 (72%), Positives = 104/137 (75%), Gaps = 1/137 (0%)
 Frame = +2

Query: 251 KEVRNMILNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALP 430
           K V NM +NFGPQHPAAHGVLRLVLELDGE V  ADPHIGLLHRGTEKLIEYKTY QALP
Sbjct: 80  KGVTNMTINFGPQHPAAHGVLRLVLELDGEVVVRADPHIGLLHRGTEKLIEYKTYLQALP 139

Query: 431 YFDRLDYVSMMCNEQCYSLAVEKLLNSMFLCGPSTSELCLRR*P-ATEHIMAVGTHALDV 607
           YFDRLDYVSMM NEQ YSLAVEKLLN           +          HIM V THALDV
Sbjct: 140 YFDRLDYVSMMTNEQAYSLAVEKLLNIDIPERAKWIRVLFGEITRLLNHIMGVTTHALDV 199

Query: 608 GALTPFFWLFEEREKMM 658
           GA+TPFFW+FEEREK M
Sbjct: 200 GAMTPFFWMFEEREKDM 216



 Score = 31.9 bits (69), Expect = 0.55
 Identities = 13/19 (68%), Positives = 16/19 (84%)
 Frame = +1

Query: 508 LDVPLRAKYIRTLFAEITR 564
           +D+P RAK+IR LF EITR
Sbjct: 166 IDIPERAKWIRVLFGEITR 184


>SB_42659| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 5834

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = -3

Query: 442  TVEVRQGLGVCLVFDQFFSTTVQETYV-RICCTDCLSVQFQ 323
            T+E+   + + LVFDQF   T+Q  YV  + C  C+   ++
Sbjct: 5118 TLEINHWVQITLVFDQFIG-TLQVYYVDSVACYTCIQTGYR 5157


>SB_435| Best HMM Match : zf-CCHC (HMM E-Value=2)
          Length = 913

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 23/82 (28%), Positives = 35/82 (42%)
 Frame = -2

Query: 464 TSWTRSPDGRSTAGLGCMSCIRSVFQYHGAGDLCEDLLHGLSLRPVPVRDAAPRERLDAG 285
           TS + + +GR  + +GC++C         A      L HG   R  P    +P +R    
Sbjct: 115 TSQSTTVEGRQCSRIGCLACCLPPITLPEA---ISSLYHGEMPRHCP---RSPNKRYSRS 168

Query: 284 ARSSGSCCVLLFGRFYDAVIRN 219
            R     C+L+ GR  DA+  N
Sbjct: 169 PR-----CILMIGRPIDAIRPN 185


>SB_57924| Best HMM Match : PG_binding_1 (HMM E-Value=3.5)
          Length = 581

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = -2

Query: 323 VRDAAPRERLDAGARSSGSCCVLLFGRFYDAVIRNR 216
           V D   R ++DAG  ++ SC  L  GR Y A  + R
Sbjct: 512 VVDLFRRLKIDAGKYTNSSCTALDLGRIYGAEYKER 547


>SB_2279| Best HMM Match : PG_binding_1 (HMM E-Value=3.5)
          Length = 351

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = -2

Query: 323 VRDAAPRERLDAGARSSGSCCVLLFGRFYDAVIRNR 216
           V D   R ++DAG  ++ SC  L  GR Y A  + R
Sbjct: 282 VVDLFRRLKIDAGKYTNSSCTALDLGRIYGAEYKER 317


>SB_51840| Best HMM Match : WD40 (HMM E-Value=8.3e-07)
          Length = 242

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = -3

Query: 391 FSTTVQETYVRICCTDCLSVQFQYETQHPVSGWMLGPEVQDHV 263
           F T  ++T  ++  TD L     Y+T  PV+   L P ++DHV
Sbjct: 69  FVTASKDTTAKLFDTDSLRHLKTYKTDRPVNSAALSP-IKDHV 110


>SB_48269| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1720

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +3

Query: 108  NVNSQRDGHRWFPDPDFVKQFEGPVMYPDESTKSLK 215
            N+      HRWF  PDF++  EG   +P + + S++
Sbjct: 1626 NIEELNREHRWFRGPDFLE--EGESEWPKKRSDSIQ 1659


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,228,371
Number of Sequences: 59808
Number of extensions: 486966
Number of successful extensions: 1241
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1237
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1962001171
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)