Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0311
         (732 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79601-2|CAB01886.1|  482|Caenorhabditis elegans Hypothetical pr...   217   5e-57
U00043-9|AAC77506.1|  474|Caenorhabditis elegans Temporarily ass...   217   9e-57
Z92809-3|CAB07269.1|  440|Caenorhabditis elegans Hypothetical pr...    29   3.4  
AC084154-8|AAK29877.1|   69|Caenorhabditis elegans Hypothetical ...    29   3.4  
Z92807-4|CAB07263.1| 1004|Caenorhabditis elegans Hypothetical pr...    28   5.9  
Z92807-3|CAB07262.1| 1059|Caenorhabditis elegans Hypothetical pr...    28   5.9  
AJ012296-1|CAA09985.1| 1059|Caenorhabditis elegans calcium ATPas...    28   5.9  

>Z79601-2|CAB01886.1|  482|Caenorhabditis elegans Hypothetical
           protein K09A9.5 protein.
          Length = 482

 Score =  217 bits (531), Expect = 5e-57
 Identities = 106/154 (68%), Positives = 118/154 (76%), Gaps = 1/154 (0%)
 Frame = +2

Query: 239 KTGRKEVRNMILNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYT 418
           K   K + NMILNFGPQHPAAHGVLRLVL+L+GE +  A PHIGLLHR TEKLIE+KTYT
Sbjct: 90  KQREKNLENMILNFGPQHPAAHGVLRLVLKLEGEVIIKAIPHIGLLHRATEKLIEHKTYT 149

Query: 419 QALPYFDRLDYVSMMCNEQCYSLAVEKLLNSMFLCGPSTSELCLRR*PATE-HIMAVGTH 595
           QALPYFDRLDYVSMMCNEQ +SLAVEKLL              +      + HIM + TH
Sbjct: 150 QALPYFDRLDYVSMMCNEQAWSLAVEKLLGIDIPTRAKYIRTLMGELTRIQNHIMGITTH 209

Query: 596 ALDVGALTPFFWLFEEREKMMEFYERVSGARMHA 697
           ALDVGA+TPFFW+FEEREK+ EF ERVSGARMHA
Sbjct: 210 ALDVGAMTPFFWMFEEREKLFEFSERVSGARMHA 243


>U00043-9|AAC77506.1|  474|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 99 protein.
          Length = 474

 Score =  217 bits (529), Expect = 9e-57
 Identities = 107/156 (68%), Positives = 120/156 (76%), Gaps = 3/156 (1%)
 Frame = +2

Query: 239 KTGRKEVRNMILNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYT 418
           K   K + NMILNFGPQHPAAHGVLRLVL+L+GE +  A PHIGLLHR TEKLIE+KTYT
Sbjct: 82  KKREKNLENMILNFGPQHPAAHGVLRLVLKLEGEVIIKAIPHIGLLHRATEKLIEHKTYT 141

Query: 419 QALPYFDRLDYVSMMCNEQCYSLAVEKLLNSMFLCGPSTSELCLRR*PAT---EHIMAVG 589
           QALPYFDRLDYVSMMCNEQ +SLA+EKLL       P    + +     T    HIM + 
Sbjct: 142 QALPYFDRLDYVSMMCNEQAFSLAIEKLLG--IDVPPRAKYIRILFGELTRIQNHIMGIT 199

Query: 590 THALDVGALTPFFWLFEEREKMMEFYERVSGARMHA 697
           THALDVGA+TPFFW+FEEREK+ EF ERVSGARMHA
Sbjct: 200 THALDVGAMTPFFWMFEEREKLFEFSERVSGARMHA 235


>Z92809-3|CAB07269.1|  440|Caenorhabditis elegans Hypothetical
           protein R17.3 protein.
          Length = 440

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 15/45 (33%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
 Frame = -2

Query: 485 DCSTARCTSWTRSPDGRSTAGLGCMSCIRSVFQY-HGAGDLCEDL 354
           DC      SWT+      T G+G    +R V Q+    G  CE L
Sbjct: 243 DCVLTDWDSWTQCTADNGTCGIGTQKRLRHVIQHAERGGAACEPL 287


>AC084154-8|AAK29877.1|   69|Caenorhabditis elegans Hypothetical
           protein Y22D7AR.10 protein.
          Length = 69

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = -3

Query: 166 CFTKSGSGNQRCPSLWEF 113
           CF KS SG++ CP  WEF
Sbjct: 29  CFPKSISGSRCCPDGWEF 46


>Z92807-4|CAB07263.1| 1004|Caenorhabditis elegans Hypothetical
           protein K11D9.2b protein.
          Length = 1004

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 11/54 (20%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
 Frame = +2

Query: 383 GTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKL-LNSMFLCGPSTSE 541
           GT ++ +     ++LP  + L   S++C+++  +L   ++ ++ MF+ G ++ +
Sbjct: 324 GTRRMAKKNAIVRSLPSVETLGCTSVICSDKTGTLTTNQMSVSKMFIAGQASGD 377


>Z92807-3|CAB07262.1| 1059|Caenorhabditis elegans Hypothetical
           protein K11D9.2a protein.
          Length = 1059

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 11/54 (20%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
 Frame = +2

Query: 383 GTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKL-LNSMFLCGPSTSE 541
           GT ++ +     ++LP  + L   S++C+++  +L   ++ ++ MF+ G ++ +
Sbjct: 324 GTRRMAKKNAIVRSLPSVETLGCTSVICSDKTGTLTTNQMSVSKMFIAGQASGD 377


>AJ012296-1|CAA09985.1| 1059|Caenorhabditis elegans calcium ATPase
           protein.
          Length = 1059

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 11/54 (20%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
 Frame = +2

Query: 383 GTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKL-LNSMFLCGPSTSE 541
           GT ++ +     ++LP  + L   S++C+++  +L   ++ ++ MF+ G ++ +
Sbjct: 324 GTRRMAKKNAIVRSLPSVETLGCTSVICSDKTGTLTTNQMSVSKMFIAGQASGD 377


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,024,965
Number of Sequences: 27780
Number of extensions: 368502
Number of successful extensions: 1006
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 951
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1002
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1714401074
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)