Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0311
         (732 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g50790.1 68414.m05712 hypothetical protein                          33   0.26 
At5g05690.1 68418.m00626 cytochrome P450 90A1 (CYP90A1) (CYP90) ...    29   2.4  
At3g19430.1 68416.m02464 late embryogenesis abundant protein-rel...    29   4.2  
At5g48010.1 68418.m05933 pentacyclic triterpene synthase, putati...    27   9.7  
At4g20270.1 68417.m02961 leucine-rich repeat transmembrane prote...    27   9.7  

>At1g50790.1 68414.m05712 hypothetical protein
          Length = 812

 Score = 32.7 bits (71), Expect = 0.26
 Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
 Frame = +3

Query: 6   EELSKMASLLNVLLRKSPNFGQKSVLLKNIPAVHNV--NSQRDGHRWFPDPDFVKQFEGP 179
           E    + S  N+LL+  P     + L +       +  NS+ DG  W P    VK ++ P
Sbjct: 276 ERFRALQSKPNLLLKGEPRLALWNDLKQRTSNAKRILNNSKIDGFEWCPYTKTVKNWDFP 335

Query: 180 VMYPDEST 203
             YP+++T
Sbjct: 336 QFYPEKAT 343


>At5g05690.1 68418.m00626 cytochrome P450 90A1 (CYP90A1) (CYP90)
           (CPD) identical to Cytochrome P450 90A1 (SP:Q42569)
           [Arabidopsis thaliana]
          Length = 472

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -3

Query: 196 SSGYMTGPSNCFTKSGSGNQRCP 128
           S+   TGPSN FT  G G + CP
Sbjct: 397 SNSVTTGPSNVFTPFGGGPRLCP 419


>At3g19430.1 68416.m02464 late embryogenesis abundant
           protein-related / LEA protein-related similar to late
           embryogenesis abundant protein [Picea glauca] GI:1350543
          Length = 559

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 18/43 (41%), Positives = 22/43 (51%)
 Frame = -2

Query: 488 PDCSTARCTSWTRSPDGRSTAGLGCMSCIRSVFQYHGAGDLCE 360
           PDCS AR T    S +GRS   L  MSC   +    G G +C+
Sbjct: 519 PDCSAARFTGNGDSNNGRSKLELPEMSCASGL---GGKGVVCK 558


>At5g48010.1 68418.m05933 pentacyclic triterpene synthase, putative
           similar to pentacyclic triterpene synthase [gi:6650207]
           [PMID: 11247608] Contains Pfam domain PF00432:
           Prenyltransferase and squalene oxidase repeat
          Length = 758

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 4/46 (8%)
 Frame = -3

Query: 418 GVCLVFDQFFST----TVQETYVRICCTDCLSVQFQYETQHPVSGW 293
           GVC ++  FF+        +TY   C     +V+F  +TQ+P  GW
Sbjct: 611 GVCFIYGTFFAVRGLVAAGKTYSN-CEAIRKAVRFLLDTQNPEGGW 655


>At4g20270.1 68417.m02961 leucine-rich repeat transmembrane protein
           kinase, putative CLAVATA1 receptor kinase, Arabidopsis
           th., PATX:G2160756
          Length = 992

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
 Frame = -3

Query: 292 MLGPEVQDHVAYFFSAGFMMLL*GTG--FNDLVDSSGYMTGPSNCFT 158
           +LGPE + HVA F  A FMM   G     + +  S GY+  P   +T
Sbjct: 843 LLGPEFEAHVADFGLAKFMMQDNGASECMSSIAGSYGYI-APEYAYT 888


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,088,803
Number of Sequences: 28952
Number of extensions: 342932
Number of successful extensions: 859
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 824
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 859
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1604469728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)