Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0309
(576 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_26408| Best HMM Match : Lipase (HMM E-Value=0) 70 1e-12
SB_19823| Best HMM Match : No HMM Matches (HMM E-Value=.) 69 2e-12
SB_43441| Best HMM Match : Lipase (HMM E-Value=8.19998e-41) 60 1e-09
SB_30050| Best HMM Match : No HMM Matches (HMM E-Value=.) 52 4e-07
SB_7713| Best HMM Match : Lipase (HMM E-Value=0.0064) 45 5e-05
SB_43904| Best HMM Match : Lipase (HMM E-Value=5e-07) 41 8e-04
SB_37850| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.018
SB_58542| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.22
SB_6245| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.67
SB_22961| Best HMM Match : Abhydrolase_1 (HMM E-Value=0.043) 31 0.89
SB_29252| Best HMM Match : Cytadhesin_P30 (HMM E-Value=1.4) 30 1.2
SB_55393| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.1
SB_39072| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_23757| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_40390| Best HMM Match : BON (HMM E-Value=0.68) 29 3.6
SB_15833| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_15037| Best HMM Match : zf-LSD1 (HMM E-Value=6.5) 29 3.6
SB_39797| Best HMM Match : VWA (HMM E-Value=6e-26) 28 4.8
SB_3428| Best HMM Match : CD20 (HMM E-Value=0.82) 28 4.8
SB_57096| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.3
SB_22619| Best HMM Match : TSP_1 (HMM E-Value=8.5e-14) 28 6.3
SB_39747| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.3
SB_5209| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.3
SB_53888| Best HMM Match : TSP_3 (HMM E-Value=9.2e-11) 27 8.3
SB_33579| Best HMM Match : Laminin_G_2 (HMM E-Value=3.2e-34) 27 8.3
SB_28381| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.3
>SB_26408| Best HMM Match : Lipase (HMM E-Value=0)
Length = 714
Score = 70.1 bits (164), Expect = 1e-12
Identities = 40/105 (38%), Positives = 55/105 (52%), Gaps = 5/105 (4%)
Frame = +3
Query: 231 QLFGLAHQNGGGNWGRVHLIGFSLGAHVVGNAGR---QAGGRPNRVTGLDPAGPRWGGNN 401
+L + + G VH+IGFS GAHV G GR + G +R+T LDPA + ++
Sbjct: 175 RLLQILEERSGRKLAYVHVIGFSFGAHVAGYVGRRMKKRGRMIDRITALDPAAMWFHKHH 234
Query: 402 Q--ALNRNAGAYVEAIHTDGGLLGIFDRIAHGDFYPTVQKPQPGC 530
+ L+ + +V+ IHT GI I H DFYP K QPGC
Sbjct: 235 EDVRLDTSDALFVDVIHTSAD-YGITSTIGHADFYPNGGKKQPGC 278
>SB_19823| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 940
Score = 69.3 bits (162), Expect = 2e-12
Identities = 40/106 (37%), Positives = 55/106 (51%), Gaps = 5/106 (4%)
Frame = +3
Query: 231 QLFGLAHQNGGGNWGRVHLIGFSLGAHVVGNAGRQ---AGGRPNRVTGLDPAGPRWGGNN 401
+L + G +L+GFSLGAH+ G GR+ G + NR+TGLDPA + +
Sbjct: 673 ELIKFLNNQTGNTPASFYLVGFSLGAHISGYVGRRIAKTGQKLNRITGLDPASIHFVNAH 732
Query: 402 Q--ALNRNAGAYVEAIHTDGGLLGIFDRIAHGDFYPTVQKPQPGCR 533
L+ + +V+ +HTD L G H DFYP K QPGCR
Sbjct: 733 VDVRLDPSDADFVDVMHTDMDLAGTPTVSGHIDFYPNGGKKQPGCR 778
>SB_43441| Best HMM Match : Lipase (HMM E-Value=8.19998e-41)
Length = 291
Score = 60.1 bits (139), Expect = 1e-09
Identities = 38/97 (39%), Positives = 50/97 (51%), Gaps = 5/97 (5%)
Frame = +3
Query: 255 NGGGNWGRVHLIGFSLGAHVVGNAG---RQAGGRPNRVTGLDPAGPRWGGN--NQALNRN 419
+G G H IGFSLGAH+ G G ++ G +R+TGLDPA + G + L+R
Sbjct: 165 SGSREGGAFHSIGFSLGAHISGYVGQRLKRIGRHLDRITGLDPATLMFKGEAPDVRLDRL 224
Query: 420 AGAYVEAIHTDGGLLGIFDRIAHGDFYPTVQKPQPGC 530
+V+ IHT + GI H DFYP Q GC
Sbjct: 225 DAQFVDVIHT-SYVFGITAPHGHMDFYPNGGTSQRGC 260
>SB_30050| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 161
Score = 51.6 bits (118), Expect = 4e-07
Identities = 25/71 (35%), Positives = 39/71 (54%)
Frame = +1
Query: 7 EVNSIRNSNYNGNLPLFVIVHGWNSNGNSAVNTMIRPALLAVSDCNVIVVDWRGLANGLY 186
+V ++ S Y+G FVI HG+ +G+++ +R ALL D NV++ DW A+G+Y
Sbjct: 89 DVKKLKASTYDGKKRTFVIAHGYTESGSTSWVGHMRQALLQKDDVNVVITDWGPGADGMY 148
Query: 187 NTAVNGVPSVG 219
A VG
Sbjct: 149 WQATANTRLVG 159
>SB_7713| Best HMM Match : Lipase (HMM E-Value=0.0064)
Length = 131
Score = 44.8 bits (101), Expect = 5e-05
Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 3/76 (3%)
Frame = +1
Query: 22 RNSN-YNGNLPLFVIVHGWNSNGNSAVNTMIRPALLAVSDCNVIVVDWRGLANG--LYNT 192
RNS + G+ L +I+HG+ +GN + ++R LL NVI VDW+ A+G LY+
Sbjct: 14 RNSTAFRGDRKLVLIIHGFMQSGNVSWIRVMRDELLKREPMNVITVDWQSGADGLNLYHV 73
Query: 193 AVNGVPSVGQFLGNFL 240
A VG L +
Sbjct: 74 AAGNTRVVGAQLAELI 89
Score = 41.5 bits (93), Expect = 5e-04
Identities = 18/29 (62%), Positives = 21/29 (72%)
Frame = +3
Query: 276 RVHLIGFSLGAHVVGNAGRQAGGRPNRVT 362
RVHLIG SLGAHV G AG + G+ R+T
Sbjct: 102 RVHLIGHSLGAHVAGYAGERLSGKVGRIT 130
>SB_43904| Best HMM Match : Lipase (HMM E-Value=5e-07)
Length = 408
Score = 40.7 bits (91), Expect = 8e-04
Identities = 22/58 (37%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Frame = +3
Query: 366 LDPAGPRWGGNNQ--ALNRNAGAYVEAIHTDGGLLGIFDRIAHGDFYPTVQKPQPGCR 533
LDPAG + + L+ + +V+ +HTD G + H DFYP K QPGCR
Sbjct: 2 LDPAGLYFVNEHVDVRLDPSDAEFVDVMHTDMDFAGTSTQSGHIDFYPNGGKNQPGCR 59
>SB_37850| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 509
Score = 36.3 bits (80), Expect = 0.018
Identities = 31/121 (25%), Positives = 48/121 (39%), Gaps = 1/121 (0%)
Frame = -2
Query: 482 NAVKNTEK-TTVGVDCLHISSCVTVQGLVVTTPPGPSRIQTGNPVGSATSLSSSVTDNVR 306
NA N++ TTV T T P + + TG P+G+ T + + +
Sbjct: 43 NATTNSQNITTVAPITTMAPDTTTAAPFTTTIAPATTALPTGTPIGTPTGIPTGILTGTA 102
Query: 305 AQAEANQVDSTPIAASVLMSQTKKLPRNCPTLGTPLTAVLYRPLARPRQSTTITLQSETA 126
+QA + TP A+V+ T P T T V P P TT++ + TA
Sbjct: 103 SQATPS---GTPTGAAVVTDTTVITTLTTPAAET--TTVATTPTTVP---TTLSTTATTA 154
Query: 125 S 123
+
Sbjct: 155 T 155
>SB_58542| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 268
Score = 32.7 bits (71), Expect = 0.22
Identities = 21/59 (35%), Positives = 27/59 (45%)
Frame = +3
Query: 204 SSQCRTVPWQLFGLAHQNGGGNWGRVHLIGFSLGAHVVGNAGRQAGGRPNRVTGLDPAG 380
SS T+ + L H G N + HL G S+G H+VG Q R V + PAG
Sbjct: 110 SSLAITIIYPLLSFLHAVGV-NKRKFHLAGISMGGHIVGVYAAQHPARVASVIMMCPAG 167
>SB_6245| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1000
Score = 31.1 bits (67), Expect = 0.67
Identities = 13/36 (36%), Positives = 16/36 (44%)
Frame = -3
Query: 397 LPPHLGPAGSKPVTLLGLPPACRPALPTTCAPKLKP 290
LPP + P P +PP C P P C+ L P
Sbjct: 753 LPPKVTPKPPAPPQFAPVPPPCAPIPPMPCSAPLPP 788
>SB_22961| Best HMM Match : Abhydrolase_1 (HMM E-Value=0.043)
Length = 183
Score = 30.7 bits (66), Expect = 0.89
Identities = 16/40 (40%), Positives = 20/40 (50%)
Frame = +3
Query: 261 GGNWGRVHLIGFSLGAHVVGNAGRQAGGRPNRVTGLDPAG 380
G N + HL G S+G H+VG Q R V + PAG
Sbjct: 6 GVNKRKFHLAGISMGGHIVGVYAAQHPARVASVIMMCPAG 45
>SB_29252| Best HMM Match : Cytadhesin_P30 (HMM E-Value=1.4)
Length = 1439
Score = 30.3 bits (65), Expect = 1.2
Identities = 32/124 (25%), Positives = 52/124 (41%), Gaps = 2/124 (1%)
Frame = -2
Query: 485 SNAVKNTEKTTVGVDCLHISSCVTVQGLVVTTPPGPSRIQTGNPVGSATSLSSSVTDNVR 306
+N T TT+ V +SC V+ T+ G S P+ + T+ SS T
Sbjct: 613 TNRCTTTSSTTISVG--PTNSCTNVKDSTNTS--GSSTTIDVCPIITCTTTSSRCTTFNG 668
Query: 305 AQAEANQVDSTPIAASVLMSQTKK-LPRNCPTLGTPLTAVLYRPLARPRQSTTITL-QSE 132
+ +P ++ S T L PT+ P A + P+A P +T +++ QS
Sbjct: 669 SPTIIGTTSGSPTTSNSPTSATAPPLAAVQPTVAAPPLAAVQLPVAAPPLATALSVAQSP 728
Query: 131 TASK 120
T S+
Sbjct: 729 TVSR 732
>SB_55393| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1597
Score = 29.5 bits (63), Expect = 2.1
Identities = 21/61 (34%), Positives = 27/61 (44%)
Frame = +3
Query: 243 LAHQNGGGNWGRVHLIGFSLGAHVVGNAGRQAGGRPNRVTGLDPAGPRWGGNNQALNRNA 422
+ + NGG N G + G + G + N G GG N G + G GGNN N N
Sbjct: 466 VGNNNGGNNNGGNNNGGNNNGGN--NNGGNNNGGNNN---GENNGGNNNGGNNNGGNNNG 520
Query: 423 G 425
G
Sbjct: 521 G 521
Score = 28.3 bits (60), Expect = 4.8
Identities = 22/59 (37%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
Frame = +3
Query: 255 NGGGNWGRVHLIGFSLGAHVVGN--AGRQAGGRPNRVTGLDPAGPRWGGNNQALNRNAG 425
N GGN G + G + G + GN G GG N G + G GGNN N N G
Sbjct: 431 NNGGNNGGNNNGGNTGGDNNGGNNYGGNNNGGNNN--VGNNNGGNNNGGNNNGGNNNGG 487
Score = 28.3 bits (60), Expect = 4.8
Identities = 22/61 (36%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
Frame = +3
Query: 249 HQNGGGNWGRVHLIGFSLGAHVVG--NAGRQAGGRPNRVTGLDPAGPRWGGNNQALNRNA 422
+ NGG N G + G + G + G N G GG N G + G GGNN N N
Sbjct: 473 NNNGGNNNGGNNNGGNNNGGNNNGGNNNGENNGGNNNG--GNNNGGNNNGGNNNGGNNNG 530
Query: 423 G 425
G
Sbjct: 531 G 531
>SB_39072| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1011
Score = 29.1 bits (62), Expect = 2.7
Identities = 24/114 (21%), Positives = 44/114 (38%)
Frame = -2
Query: 395 TTPPGPSRIQTGNPVGSATSLSSSVTDNVRAQAEANQVDSTPIAASVLMSQTKKLPRNCP 216
+TP PS T + + ++ S+ T N + + STP S T P
Sbjct: 250 STPSTPSMPSTPSTPSTPSTPSTPCTPNTPSTPSTPSMPSTPSTPST--PSTPSTPSTPS 307
Query: 215 TLGTPLTAVLYRPLARPRQSTTITLQSETASKAGRIMVFTAEFPLLFQPWTITK 54
TP T + P+ +T + ++ +I + EF F+ W++ +
Sbjct: 308 APSTPSTPSTPSTPSTPKTPSTPCTPNTPSTNRKKIFISALEF--AFETWSMER 359
Score = 27.5 bits (58), Expect = 8.3
Identities = 20/78 (25%), Positives = 30/78 (38%), Gaps = 1/78 (1%)
Frame = -2
Query: 395 TTPPGPSRIQTGNPVGSATSLSSSVTDNVRAQAEANQVDSTPIAASVLMS-QTKKLPRNC 219
+TP PS T + + ++ S+ +T + TPI S L + T P
Sbjct: 139 STPSTPSTPSTPSTPSTPSTPSTPITPGTPSTPSTPSAPGTPITPSTLSTPSTPSTPSTR 198
Query: 218 PTLGTPLTAVLYRPLARP 165
T TP T L+ P
Sbjct: 199 STPSTPSTPSTPSTLSMP 216
Score = 27.5 bits (58), Expect = 8.3
Identities = 20/78 (25%), Positives = 30/78 (38%), Gaps = 1/78 (1%)
Frame = -2
Query: 395 TTPPGPSRIQTGNPVGSATSLSSSVTDNVRAQAEANQVDSTPIAASVLMS-QTKKLPRNC 219
+TP PS T + + ++ S+ +T + TPI S L + T P
Sbjct: 689 STPSTPSMPNTPSTPSTPSTPSTPITPGTPSTPSTPSAPGTPITPSTLSTPSTPSTPSTR 748
Query: 218 PTLGTPLTAVLYRPLARP 165
T TP T L+ P
Sbjct: 749 STPSTPSTPSTPSTLSMP 766
>SB_23757| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2834
Score = 29.1 bits (62), Expect = 2.7
Identities = 18/50 (36%), Positives = 24/50 (48%)
Frame = -3
Query: 427 APALRFRAWLLPPHLGPAGSKPVTLLGLPPACRPALPTTCAPKLKPIKWT 278
A + FRA + P PA S P+ PP + ALP AP + P + T
Sbjct: 1762 ASSASFRAQTVAPITQPALSSPLVAQSAPPNSQAALPV--APVIPPAQST 1809
>SB_40390| Best HMM Match : BON (HMM E-Value=0.68)
Length = 561
Score = 28.7 bits (61), Expect = 3.6
Identities = 14/35 (40%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Frame = -3
Query: 391 PHLGPAGSKPVTLLGLPPACRPALPTTC-APKLKP 290
P GP+ P T L P RP PT C P +P
Sbjct: 106 PCYGPSAKPPATALVPNPLLRPQCPTPCYGPSAQP 140
>SB_15833| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 775
Score = 28.7 bits (61), Expect = 3.6
Identities = 14/35 (40%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Frame = -3
Query: 391 PHLGPAGSKPVTLLGLPPACRPALPTTC-APKLKP 290
P GP+ P T L P RP PT C P +P
Sbjct: 436 PCFGPSAPPPATALVPNPLLRPQCPTPCYGPSAQP 470
>SB_15037| Best HMM Match : zf-LSD1 (HMM E-Value=6.5)
Length = 191
Score = 28.7 bits (61), Expect = 3.6
Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Frame = +3
Query: 63 CPRLEQQRKLRCEHHDPPRLAGRLRLQ--RYCCGLAWSC 173
CP LR H PP GR+R+ R+C G+A C
Sbjct: 33 CPLTAIVLGLRASVHLPPLRCGRVRVSTYRHCVGVACEC 71
>SB_39797| Best HMM Match : VWA (HMM E-Value=6e-26)
Length = 317
Score = 28.3 bits (60), Expect = 4.8
Identities = 21/55 (38%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Frame = -1
Query: 249 EPDQKVAKELSDTGNSIDGS-VV*TVGKTTPVHNNNVAVGDGQQGGADHGVHSGV 88
EPD+K KE D G ID S + + PV N VA Q + G H GV
Sbjct: 67 EPDKKPCKEAIDVGVIIDASESINNEQENFPVVLNFVANISKQYQVSQEGTHFGV 121
>SB_3428| Best HMM Match : CD20 (HMM E-Value=0.82)
Length = 335
Score = 28.3 bits (60), Expect = 4.8
Identities = 18/50 (36%), Positives = 26/50 (52%)
Frame = +1
Query: 427 LMWRQSTPTVVFSVFLTALLMVTFTQRCRNPNRVAELVLLSQSSLRIVRS 576
++W + TP V FSVFL L F + N +R A V+ + L+ V S
Sbjct: 138 VIWYRITPNVSFSVFLKELSSPLFIRCLFNRSRGASSVVGAFGLLQFVYS 187
>SB_57096| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 442
Score = 27.9 bits (59), Expect = 6.3
Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Frame = -3
Query: 463 RRPPSVWIAST*APALRFRAWLLPPHLGPAGSKPVTLLGLPPACRPA--LPTTCAP 302
RR PS W+ S P+ R + LP P+G P LP P+ LP+ C P
Sbjct: 203 RRLPSGWLPSRRLPSRRLPSGRLPSRRLPSGRLPSG--RLPSRWLPSRRLPSGCLP 256
>SB_22619| Best HMM Match : TSP_1 (HMM E-Value=8.5e-14)
Length = 506
Score = 27.9 bits (59), Expect = 6.3
Identities = 17/40 (42%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
Frame = +3
Query: 309 HVVGNAGRQAGGRPNRVTGLDPAG--PRWGGNNQALNRNA 422
H GNAG Q R V+ P G P +QA NRNA
Sbjct: 106 HQCGNAGTQTRTRTKTVSEACPGGRCPYHFSESQACNRNA 145
>SB_39747| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 356
Score = 27.9 bits (59), Expect = 6.3
Identities = 21/50 (42%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Frame = -2
Query: 245 QTKKLPRNCPTLGTPLTAVLYRPLARPRQS-TTITLQSET-ASKAGRIMV 102
Q LPRN P L + T V R +RP TT++ S T S+AG I V
Sbjct: 67 QRTSLPRNRPLLPSRETPVQKRNPSRPISGRTTVSALSRTPGSRAGGITV 116
>SB_5209| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 67
Score = 27.5 bits (58), Expect = 8.3
Identities = 15/28 (53%), Positives = 16/28 (57%)
Frame = +3
Query: 285 LIGFSLGAHVVGNAGRQAGGRPNRVTGL 368
+IGFSLG HV G AG R TGL
Sbjct: 21 VIGFSLGGHVAG----YAGSRIKNTTGL 44
>SB_53888| Best HMM Match : TSP_3 (HMM E-Value=9.2e-11)
Length = 1012
Score = 27.5 bits (58), Expect = 8.3
Identities = 35/136 (25%), Positives = 47/136 (34%), Gaps = 8/136 (5%)
Frame = -2
Query: 407 GLVVTTPPGPS---RIQTGNPVGSATSLSSSVTDNVRAQAEANQVDSTPIAASVLMSQTK 237
G TTP S I T NP GS ++ + SVT + + TP +
Sbjct: 880 GPTTTTPISTSAAPEITTANP-GSPSTTTKSVT----TPQTSPKTPQTPATLPTTQTPEP 934
Query: 236 KLPRNCPTLGTPLTAVLYRPLARPRQSTTITLQSETASKAGRI--MVFTAEFPLLFQP-- 69
+ PT TP T PL S T Q G I ++F F L+
Sbjct: 935 GTEKTMPTTATPGTGQPTTPLTTSVPSDRSTEQQGEGLSGGSIGGIIFAVIFLLVIMAAV 994
Query: 68 -WTITKRGRFPL*FEF 24
W K+ P F +
Sbjct: 995 IWYYRKKSLPPASFRY 1010
>SB_33579| Best HMM Match : Laminin_G_2 (HMM E-Value=3.2e-34)
Length = 1071
Score = 27.5 bits (58), Expect = 8.3
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = -2
Query: 527 TRLGFLHRWVKVTMSNAVKNTEKTTVGVDCLHISSCV 417
+R G LH WV T+ N + + T DC I+S V
Sbjct: 536 SRSGSLHSWVDGTIKNMDQPESQQTSQTDCDTINSLV 572
>SB_28381| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 193
Score = 27.5 bits (58), Expect = 8.3
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = +3
Query: 312 VVGNAGRQAG-GRPNRVTGLDPAGPRWGGNNQALNRNA 422
+ N G +AG G P V G+D +NQ LN+NA
Sbjct: 9 ISANIGTKAGTGPPLEVDGIDKLDEMTFDSNQLLNKNA 46
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,772,842
Number of Sequences: 59808
Number of extensions: 510287
Number of successful extensions: 1661
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 1430
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1645
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1373676929
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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