Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0309
         (576 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    28   0.076
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    24   0.94 
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   1.6  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   1.6  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          21   6.6  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      21   6.6  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    21   6.6  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    21   8.7  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   8.7  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 27.9 bits (59), Expect = 0.076
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -2

Query: 218 PTLGTPLTAVLYRPLARPRQST 153
           P +GTP T ++Y+P   P Q++
Sbjct: 847 PVIGTPSTGMMYKPFLIPEQTS 868


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 24.2 bits (50), Expect = 0.94
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -2

Query: 395 TTPPGPSRIQTGNPVGSATSLSSS 324
           TTP  PSR Q+   + SA ++S+S
Sbjct: 530 TTPVLPSRFQSHPSIDSANTISNS 553


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = -1

Query: 168  TTPVHNNNVAVGDGQQGGAD 109
            + P +N +   GDG++GGA+
Sbjct: 1052 SNPSYNFSSVSGDGEEGGAE 1071


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = -1

Query: 168  TTPVHNNNVAVGDGQQGGAD 109
            + P +N +   GDG++GGA+
Sbjct: 1048 SNPSYNFSSVSGDGEEGGAE 1067


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +1

Query: 319 VTLDDRLVADPTGLPVW 369
           +TLDD++   P   P+W
Sbjct: 643 MTLDDKVFGFPLDRPMW 659


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +1

Query: 319 VTLDDRLVADPTGLPVW 369
           +TLDD++   P   P+W
Sbjct: 643 MTLDDKVFGFPLDRPMW 659


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +1

Query: 4   HEVNSIRNSNYNGN 45
           H  N+  N+NYN N
Sbjct: 324 HNNNNYNNNNYNNN 337


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 10/37 (27%), Positives = 17/37 (45%)
 Frame = -1

Query: 531 CNPVGVSAPLGKSHHEQCGQKYREDHRRCGLPPHKLL 421
           CN    S+ +  +   +    YRE  +R  +P + LL
Sbjct: 375 CNIYNASSRMENNLRGETQSNYREMEKRQSVPANDLL 411


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +3

Query: 72  LEQQRKLRCEHHD 110
           L + R +RC HHD
Sbjct: 142 LTKSRLMRCLHHD 154


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 185,404
Number of Sequences: 438
Number of extensions: 4813
Number of successful extensions: 12
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16626408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)