Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0309
(576 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g37925.1 68415.m04655 copper transporter family protein simil... 31 0.55
At5g11690.1 68418.m01366 mitochondrial import inner membrane tra... 30 1.3
At3g28040.1 68416.m03500 leucine-rich repeat transmembrane prote... 30 1.3
At3g07900.1 68416.m00965 expressed protein contains Pfam PF03138... 29 1.7
At1g54990.1 68414.m06281 expressed protein 29 2.2
At2g37780.1 68415.m04639 DC1 domain-containing protein contains ... 29 2.9
At2g43680.2 68415.m05430 calmodulin-binding family protein simil... 28 3.9
At2g43680.1 68415.m05429 calmodulin-binding family protein simil... 28 3.9
At2g32120.2 68415.m03926 heat shock protein 70 family protein / ... 28 3.9
At2g32120.1 68415.m03925 heat shock protein 70 family protein / ... 28 3.9
At2g05510.1 68415.m00583 glycine-rich protein 28 3.9
At1g08680.2 68414.m00965 ARF GAP-like zinc finger-containing pro... 28 3.9
At1g08680.1 68414.m00964 ARF GAP-like zinc finger-containing pro... 28 3.9
At2g01570.1 68415.m00081 gibberellin response modulator (RGA1) /... 28 5.1
At3g32940.1 68416.m04174 expressed protein 27 6.8
At1g65440.1 68414.m07424 glycine-rich protein 27 6.8
At4g02020.1 68417.m00272 zeste-like protein 1 (EZA1) identical t... 27 9.0
At2g16650.1 68415.m01911 expressed protein 27 9.0
At1g32810.1 68414.m04044 expressed protein 27 9.0
>At2g37925.1 68415.m04655 copper transporter family protein similar
to SP|Q39065 Copper transporter 1 (COPT1) {Arabidopsis
thaliana}; contains Pfam profile PF04145: Ctr copper
transporter family; supporting cDNA
gi|18496855|gb|AF466372.1|
Length = 145
Score = 31.1 bits (67), Expect = 0.55
Identities = 22/79 (27%), Positives = 34/79 (43%), Gaps = 5/79 (6%)
Frame = +1
Query: 58 VIVHGWNSNGNSAVNTMIRPALLAVS-----DCNVIVVDWRGLANGLYNTAVNGVPSVGQ 222
V+V WN+ + T RP+LL + +C V+ W G G+Y A+ V
Sbjct: 8 VVVEAWNTTTTTQTQTPHRPSLLHPTFYWGYNCQVLFSGWPGSDRGMYALALIFV----F 63
Query: 223 FLGNFLVWLIKTEAAIGVE 279
FL WL + A ++
Sbjct: 64 FLAFLAEWLARCSDASSIK 82
>At5g11690.1 68418.m01366 mitochondrial import inner membrane
translocase subunit Tim17, putative similar to SP|Q9SP35
Mitochondrial import inner membrane translocase subunit
TIM17 {Arabidopsis thaliana}; contains Pfam profile
PF02466: Mitochondrial import inner membrane translocase
subunit Tim17
Length = 133
Score = 29.9 bits (64), Expect = 1.3
Identities = 23/67 (34%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
Frame = +3
Query: 279 VHLIGFSLGAHVVGNAGRQ-AGGRPNRVTGLDPAGPRWGGNNQALNRNAGAYVEAIHTDG 455
V+ IG++ GA VG + G N P G R+ G QA + NA G
Sbjct: 16 VNAIGYAFGAGAVGGSVYHFVRGAYN-----SPIGARYVGGTQAASMNAPRLGGTFAVFG 70
Query: 456 GLLGIFD 476
GLL FD
Sbjct: 71 GLLSTFD 77
>At3g28040.1 68416.m03500 leucine-rich repeat transmembrane protein
kinase, putative contains Pfam profiles: PF00560 leucine
rich repeat, PF00069 eukaryotic protein kinase domain
Length = 1016
Score = 29.9 bits (64), Expect = 1.3
Identities = 14/45 (31%), Positives = 26/45 (57%)
Frame = +2
Query: 137 TATLLLWTGVVLPTVYTTLPSMEFPVSDSSLATFWSGSSKRRRQL 271
+A +L+++GV++ T+ D++L + +SGSSK R L
Sbjct: 652 SAAILIFSGVIIITLLNASVRRRLAFVDNALESIFSGSSKSGRSL 696
>At3g07900.1 68416.m00965 expressed protein contains Pfam PF03138:
Plant protein family. The function of this family of
plant proteins is unknown; previously annotated as
'auxin-independent growth promoter -related' based on
similarity to axi 1 protein (GB:X80301) (GI:559920) from
[Nicotiana tabacum], which, due to scienitific fraud was
retracted. Retraction in: Schell J. EMBO J 1999 May
17;18(10):2908. PMID:10400497.
Length = 579
Score = 29.5 bits (63), Expect = 1.7
Identities = 20/69 (28%), Positives = 29/69 (42%)
Frame = -2
Query: 266 AASVLMSQTKKLPRNCPTLGTPLTAVLYRPLARPRQSTTITLQSETASKAGRIMVFTAEF 87
A S + S +KL CP +T +L R L PR + E + T+EF
Sbjct: 393 AKSSMTSNERKLAGLCPLNAKEVTRLL-RALGAPRDARIYWAGGEPLGGKEALKPLTSEF 451
Query: 86 PLLFQPWTI 60
P L+ + I
Sbjct: 452 PHLYNKYDI 460
>At1g54990.1 68414.m06281 expressed protein
Length = 473
Score = 29.1 bits (62), Expect = 2.2
Identities = 16/49 (32%), Positives = 27/49 (55%)
Frame = +1
Query: 226 LGNFLVWLIKTEAAIGVEST*LASAWARTLSVTLDDRLVADPTGLPVWI 372
LG V L+ ++A+G+ S ++ W SVTL D ++ LP+W+
Sbjct: 239 LGLAPVHLVLHDSALGLASNWVSENWQSVRSVTLIDSSIS--PALPLWV 285
>At2g37780.1 68415.m04639 DC1 domain-containing protein contains
Pfam PF03107: DC1 domain
Length = 286
Score = 28.7 bits (61), Expect = 2.9
Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Frame = -1
Query: 528 NPVGVSAPLGKSHHEQCGQKYREDHRRCGLP--PHKLLRYGSGLGCYHPTWAQPDP 367
+P+ AP+ S + K R H G P PH+ YG G+ +P QP+P
Sbjct: 104 HPLCTYAPMHASSPDLLVTKQRSLHGHAGQPSPPHQ---YGQGIPYGYPHMGQPEP 156
>At2g43680.2 68415.m05430 calmodulin-binding family protein similar
to SF16 protein [Helianthus annuus] GI:560150; contains
Pfam profile PF00612: IQ calmodulin-binding motif
Length = 669
Score = 28.3 bits (60), Expect = 3.9
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Frame = -3
Query: 457 PPSVWIAST*APALRFRAWLLP-PH-LGPAGSKPVTLLGLPPACRPALPTTCAPK 299
PP++ AST P+ R +P P P G+ P + PP+ R PT P+
Sbjct: 175 PPTLRPASTRVPSQRITPHSVPSPRPSSPRGASPQAISSKPPSPRAEPPTLDTPR 229
>At2g43680.1 68415.m05429 calmodulin-binding family protein similar
to SF16 protein [Helianthus annuus] GI:560150; contains
Pfam profile PF00612: IQ calmodulin-binding motif
Length = 668
Score = 28.3 bits (60), Expect = 3.9
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Frame = -3
Query: 457 PPSVWIAST*APALRFRAWLLP-PH-LGPAGSKPVTLLGLPPACRPALPTTCAPK 299
PP++ AST P+ R +P P P G+ P + PP+ R PT P+
Sbjct: 174 PPTLRPASTRVPSQRITPHSVPSPRPSSPRGASPQAISSKPPSPRAEPPTLDTPR 228
>At2g32120.2 68415.m03926 heat shock protein 70 family protein /
HSP70 family protein similar to SP|P22953 Heat shock
cognate 70 kDa protein 1 (Hsc70.1) {Arabidopsis
thaliana}; contains InterPro accession IPR001023: Heat
shock protein Hsp70
Length = 563
Score = 28.3 bits (60), Expect = 3.9
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = +1
Query: 433 WRQSTPTVVFSVFLTALLMVTFTQRCRNPNRVAELVLLSQSSLRIVR 573
WR +TP V ++FL L ++ Q R V V +S S ++ R
Sbjct: 138 WRSTTPEEVLAIFLVELRLMAEAQLKRPVRNVVLTVPVSFSRFQLTR 184
>At2g32120.1 68415.m03925 heat shock protein 70 family protein /
HSP70 family protein similar to SP|P22953 Heat shock
cognate 70 kDa protein 1 (Hsc70.1) {Arabidopsis
thaliana}; contains InterPro accession IPR001023: Heat
shock protein Hsp70
Length = 563
Score = 28.3 bits (60), Expect = 3.9
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = +1
Query: 433 WRQSTPTVVFSVFLTALLMVTFTQRCRNPNRVAELVLLSQSSLRIVR 573
WR +TP V ++FL L ++ Q R V V +S S ++ R
Sbjct: 138 WRSTTPEEVLAIFLVELRLMAEAQLKRPVRNVVLTVPVSFSRFQLTR 184
>At2g05510.1 68415.m00583 glycine-rich protein
Length = 127
Score = 28.3 bits (60), Expect = 3.9
Identities = 20/61 (32%), Positives = 23/61 (37%), Gaps = 3/61 (4%)
Frame = +3
Query: 240 GLAHQNGGGNWGRVHLI---GFSLGAHVVGNAGRQAGGRPNRVTGLDPAGPRWGGNNQAL 410
G H +GG N G H + G G H G G GG + G G GG L
Sbjct: 58 GGGHGHGGHNGGGGHGLDGYGGGHGGHYGGGGGHYGGGGGHGGGGHYGGGGHHGGGGHGL 117
Query: 411 N 413
N
Sbjct: 118 N 118
>At1g08680.2 68414.m00965 ARF GAP-like zinc finger-containing
protein ZiGA4 (ZIGA4) nearly identical to ARF GAP-like
zinc finger-containing protein ZiGA4 GI:10441354 from
[Arabidopsis thaliana]; contains InterPro accession
IPR001164: Human Rev interacting-like protein (hRIP)
Length = 648
Score = 28.3 bits (60), Expect = 3.9
Identities = 16/54 (29%), Positives = 26/54 (48%)
Frame = -2
Query: 377 SRIQTGNPVGSATSLSSSVTDNVRAQAEANQVDSTPIAASVLMSQTKKLPRNCP 216
SR TG+ G ++ V ++ +A + Q+ P+A SV Q PR+ P
Sbjct: 301 SRQNTGSQQGKTSNHVPLVAESTKAPIDLFQLPGAPVAQSVDTFQPSIAPRSPP 354
>At1g08680.1 68414.m00964 ARF GAP-like zinc finger-containing
protein ZiGA4 (ZIGA4) nearly identical to ARF GAP-like
zinc finger-containing protein ZiGA4 GI:10441354 from
[Arabidopsis thaliana]; contains InterPro accession
IPR001164: Human Rev interacting-like protein (hRIP)
Length = 649
Score = 28.3 bits (60), Expect = 3.9
Identities = 16/54 (29%), Positives = 26/54 (48%)
Frame = -2
Query: 377 SRIQTGNPVGSATSLSSSVTDNVRAQAEANQVDSTPIAASVLMSQTKKLPRNCP 216
SR TG+ G ++ V ++ +A + Q+ P+A SV Q PR+ P
Sbjct: 301 SRQNTGSQQGKTSNHVPLVAESTKAPIDLFQLPGAPVAQSVDTFQPSIAPRSPP 354
>At2g01570.1 68415.m00081 gibberellin response modulator (RGA1) /
gibberellin-responsive modulator identical to GB:Y11336,
member of SCARECROW family
Length = 587
Score = 27.9 bits (59), Expect = 5.1
Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 6/65 (9%)
Frame = +3
Query: 276 RVHLIGFSLGAHVVGNAGRQA-----GGRPN-RVTGLDPAGPRWGGNNQALNRNAGAYVE 437
RVH+I FS+ + A QA GG P R+TG+ P P + + E
Sbjct: 322 RVHVIDFSMNQGLQWPALMQALALREGGPPTFRLTGIGPPAPDNSDHLHEVGCKLAQLAE 381
Query: 438 AIHTD 452
AIH +
Sbjct: 382 AIHVE 386
>At3g32940.1 68416.m04174 expressed protein
Length = 607
Score = 27.5 bits (58), Expect = 6.8
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +2
Query: 185 TTLPSMEFPVSDSSLATFWSGSSKR 259
T +PS+ FP + S +A + SGSS R
Sbjct: 417 TEIPSIPFPSASSLIAEYGSGSSLR 441
>At1g65440.1 68414.m07424 glycine-rich protein
Length = 1647
Score = 27.5 bits (58), Expect = 6.8
Identities = 17/57 (29%), Positives = 24/57 (42%)
Frame = +3
Query: 255 NGGGNWGRVHLIGFSLGAHVVGNAGRQAGGRPNRVTGLDPAGPRWGGNNQALNRNAG 425
+GGG WG G G G G ++GG + G +G GG+ N + G
Sbjct: 1526 SGGGGWGS-ESAGKKTGGGSTGGWGSESGGNKSDGAGSWGSGSGGGGSGGWGNDSGG 1581
>At4g02020.1 68417.m00272 zeste-like protein 1 (EZA1) identical to
enhancer of zeste-like protein 1(EZA1) (GI:4185507)
[Arabidopsis thaliana]; similar to polycomb group
[Arabidopsis thaliana] GI:1903019 (curly leaf); contains
Pfam profile PF00856: SET domain
Length = 856
Score = 27.1 bits (57), Expect = 9.0
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = +3
Query: 108 DPPRLAGRLRLQRYCCGLAWSCQRSIQHCRQWSSQCRT 221
D P L ++YC G + SC+ + C SQCR+
Sbjct: 620 DCPCLTNETCCEKYC-GCSKSCKNRFRGCHCAKSQCRS 656
>At2g16650.1 68415.m01911 expressed protein
Length = 511
Score = 27.1 bits (57), Expect = 9.0
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = +3
Query: 39 WKPASLCYCPRLEQQRKLRCEHH 107
+ PA LC+C +LE ++ E H
Sbjct: 149 YAPALLCFCEKLEAEKGYEVEEH 171
>At1g32810.1 68414.m04044 expressed protein
Length = 654
Score = 27.1 bits (57), Expect = 9.0
Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Frame = -2
Query: 386 PGPSRIQ--TGNPVGSATSLSSSVTDNVRAQAEANQVDSTPIAASV-LMSQTKKLP 228
PG S Q T NPV S SL+ +++D A +Q++S+P V M Q LP
Sbjct: 278 PGQSIFQSSTKNPVQSIISLAPNLSDEELALRLHHQLNSSPRVPRVPRMRQPGSLP 333
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,461,512
Number of Sequences: 28952
Number of extensions: 355461
Number of successful extensions: 1305
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1225
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1297
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1121903184
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -