Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0308
         (573 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    23   2.4  
DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7 prot...    21   5.6  
AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     21   7.5  
AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    21   9.9  
AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.     21   9.9  

>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = +3

Query: 228 LKWDSNRSSLDVLNNSSARSWSTEVYCPVPGLVPTAPSSRN 350
           L+ D +  S+   + +S      E   P PG VPT  S R+
Sbjct: 28  LEGDEDTGSMTPNSAASPAPPEEEAASPTPGDVPTPSSPRS 68



 Score = 22.6 bits (46), Expect = 2.4
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = -3

Query: 394 SKSLTISSFLKPPS*FLLDGAVGTSPGTG 308
           S S  ISS   PP  F +D  + + PG G
Sbjct: 176 SVSPLISSSSSPPGVFPVDAPMHSPPGDG 204



 Score = 21.4 bits (43), Expect = 5.6
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = -1

Query: 306 STPRSTRSEPMSCSARPKN 250
           S+PRS   +P++C   P +
Sbjct: 64  SSPRSISEDPLNCRDLPNS 82


>DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7
           protein.
          Length = 980

 Score = 21.4 bits (43), Expect = 5.6
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -3

Query: 340 DGAVGTSPGTGQYTSVD 290
           DG   TS  +GQYT+ D
Sbjct: 893 DGPYETSISSGQYTTKD 909


>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 10/30 (33%), Positives = 11/30 (36%)
 Frame = -3

Query: 250 LRFESHFNAHVHALSCSHSGDAHQHVIGQF 161
           + F  HFN H       HS    Q   G F
Sbjct: 161 MTFRYHFNVHNSGTHFWHSHSGFQRSDGTF 190


>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 20.6 bits (41), Expect = 9.9
 Identities = 8/28 (28%), Positives = 11/28 (39%)
 Frame = -3

Query: 250 LRFESHFNAHVHALSCSHSGDAHQHVIG 167
           L    H N  +H    +H      HV+G
Sbjct: 39  LHHSPHLNHAMHPYHANHVNPTANHVMG 66


>AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.
          Length = 301

 Score = 20.6 bits (41), Expect = 9.9
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -1

Query: 225 PMFMHSAVAIPVMPINM 175
           P   HSA+  P MP N+
Sbjct: 122 PAAAHSALLSPAMPHNL 138


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 139,801
Number of Sequences: 336
Number of extensions: 3226
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14203976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)