Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0308
         (573 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal pro...    29   0.48 
SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein S4|Schizosacch...    29   0.48 
SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein S4|Schizos...    29   0.48 
SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis Mei2...    28   1.1  
SPBC17D11.01 |nep1||nedd8 protease Nep1|Schizosaccharomyces pomb...    28   1.1  
SPAC4G9.04c |||cleavage and polyadenylation specificity factor |...    27   2.6  
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch...    26   3.4  
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom...    25   7.9  

>SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal
           protein S4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 262

 Score = 29.1 bits (62), Expect = 0.48
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = +1

Query: 436 HWALSQLSSTASCSPGATARKTSRCLPATERRKQKLELKLS 558
           HW L +LS T +  P     K   CLP     + +L+  L+
Sbjct: 17  HWLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALN 57


>SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein
           S4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 262

 Score = 29.1 bits (62), Expect = 0.48
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = +1

Query: 436 HWALSQLSSTASCSPGATARKTSRCLPATERRKQKLELKLS 558
           HW L +LS T +  P     K   CLP     + +L+  L+
Sbjct: 17  HWLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALN 57


>SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein
           S4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 262

 Score = 29.1 bits (62), Expect = 0.48
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = +1

Query: 436 HWALSQLSSTASCSPGATARKTSRCLPATERRKQKLELKLS 558
           HW L +LS T +  P     K   CLP     + +L+  L+
Sbjct: 17  HWLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALN 57


>SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis
           Mei2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 750

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = +3

Query: 240 SNRSSLDVLNNSSARSWSTEVYCPVPGLVPTAPSSRN 350
           +N  S+ +    S+ +W T  Y  V    P APS RN
Sbjct: 426 NNFGSVPLGRTESSPAWGTSGYYDVSSTSPVAPSDRN 462


>SPBC17D11.01 |nep1||nedd8 protease Nep1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 420

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 15/57 (26%), Positives = 21/57 (36%)
 Frame = -3

Query: 346 LLDGAVGTSPGTGQYTSVDQERADELFSTSKELRFESHFNAHVHALSCSHSGDAHQH 176
           LLD A+   P +   +    E ++     S E    +H N H       H G  H H
Sbjct: 247 LLDVALPVLPKSSDSSETSHESSNSNLKKSSESGSTNHHNNHESDKDLHHEGHHHHH 303


>SPAC4G9.04c |||cleavage and polyadenylation specificity factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 638

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = -1

Query: 135 PQWNCLAPITLRIGRDLSKSSLRPPAMK 52
           PQ +C   ++L    DLSKSSL  P  K
Sbjct: 383 PQASCTEAVSLTADIDLSKSSLATPRPK 410


>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
           homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2609

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 18/42 (42%), Positives = 21/42 (50%)
 Frame = -1

Query: 195 PVMPINMLLVSLATCPEPICPQWNCLAPITLRIGRDLSKSSL 70
           PVMPIN   VSL    E +       AP TL +  D  KS+L
Sbjct: 384 PVMPINGYSVSLWLNIESLMNDDGNYAPTTLFLISDFLKSTL 425


>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1562

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 17/46 (36%), Positives = 20/46 (43%), Gaps = 5/46 (10%)
 Frame = -1

Query: 357 HRNFYSTERWAPVRGLDSTPRST-RS----EPMSCSARPKNFGSSP 235
           H +F+   RW   R  +S  RST RS    EP   S  P     SP
Sbjct: 333 HSSFFRRRRWRRSRSQESASRSTIRSTDEREPERTSEDPPQLPPSP 378


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,459,403
Number of Sequences: 5004
Number of extensions: 51772
Number of successful extensions: 151
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 244081442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)