Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0308
(573 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_1118 + 27756288-27756337,27756505-27756619,27756883-277570... 90 1e-18
02_04_0261 + 21363787-21363891,21364185-21364286,21365854-213659... 59 2e-09
01_06_0663 - 30991390-30992340 58 7e-09
05_07_0134 - 27911920-27912762 47 9e-06
01_05_0431 - 22084474-22084635,22084740-22084844,22084931-220850... 38 0.004
06_01_1052 + 8312752-8312862,8312969-8313041,8313285-8313362,831... 36 0.017
07_01_0885 + 7353926-7354770,7354845-7355487 30 1.1
02_02_0173 - 7433744-7433775,7434002-7434241,7434548-7437410 29 2.6
03_02_0556 + 9448878-9449264 29 3.5
11_01_0119 - 931934-932359,933409-933564 28 4.6
05_04_0247 + 19358929-19359187,19360439-19360639,19361426-193615... 28 4.6
12_02_0065 - 13109652-13110746,13110843-13111762,13139462-131395... 27 8.0
08_02_0707 - 20212190-20214592 27 8.0
06_01_0717 - 5219848-5220178,5220268-5220617,5221807-5221982,522... 27 8.0
05_04_0058 + 17548945-17548947,17549234-17549281,17549618-175496... 27 8.0
01_01_1099 - 8700627-8700710,8701148-8701200,8701287-8701344,870... 27 8.0
>06_03_1118 +
27756288-27756337,27756505-27756619,27756883-27757033,
27757219-27757301,27757424-27757519,27757615-27757757,
27757858-27757942,27758158-27758237,27758335-27758422
Length = 296
Score = 89.8 bits (213), Expect = 1e-18
Identities = 42/83 (50%), Positives = 56/83 (67%)
Frame = +3
Query: 258 DVLNNSSARSWSTEVYCPVPGLVPTAPSSRNYDGGFKNELMVKDLELASGMALGIRSPIP 437
D+ N SSAR WS++ Y PVPG++ PSSRNYDGGF ++LM KDL+LA A G+ P
Sbjct: 201 DIFNCSSARCWSSDTYNPVPGVMMDVPSSRNYDGGFTSKLMTKDLDLAMASASGVGFNCP 260
Query: 438 LGAVATQLYRIVQSRGYGQKDFS 506
G+ A ++YR + + G KDFS
Sbjct: 261 FGSQALEIYRKLCADGCELKDFS 283
Score = 76.2 bits (179), Expect = 2e-14
Identities = 35/81 (43%), Positives = 50/81 (61%)
Frame = +2
Query: 2 DAPVSGGVMGAQNATLAFMAGGRKEDFERSLPILKVMGAKQFHCGQIGSGQVAKLTNNML 181
DAPVSGGV A+ L FM GG +E + + P+L MG K +CG G+G VAK+ NNM
Sbjct: 115 DAPVSGGVPAAEAGKLTFMVGGSEEAYLAAKPLLLSMGKKTIYCGGAGNGSVAKICNNMA 174
Query: 182 MGITGMATAECMNMGIKMGLE 244
M I+ + +E +G +G++
Sbjct: 175 MAISMLGVSEAFALGQNLGIK 195
>02_04_0261 +
21363787-21363891,21364185-21364286,21365854-21365964,
21366233-21366334,21366901-21367016,21367180-21367258,
21367347-21367517,21367617-21367712
Length = 293
Score = 59.3 bits (137), Expect = 2e-09
Identities = 30/83 (36%), Positives = 46/83 (55%)
Frame = +2
Query: 2 DAPVSGGVMGAQNATLAFMAGGRKEDFERSLPILKVMGAKQFHCGQIGSGQVAKLTNNML 181
+APVSG A++ L +A G K ++ +P V+G K F G+IG+G KL NM+
Sbjct: 117 EAPVSGSKKPAEDGQLVILAAGDKVLYDDMVPAFDVLGKKSFFLGEIGNGAKMKLVVNMI 176
Query: 182 MGITGMATAECMNMGIKMGLEPK 250
MG A +E +++ GL P+
Sbjct: 177 MGSMMNALSEGLSLADNSGLSPQ 199
Score = 28.3 bits (60), Expect = 4.6
Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Frame = +3
Query: 348 NYDGGFKNELMVKDLELASGMALGIRSPI--PLGAVATQLYRIVQSRGYGQKDFS 506
+Y+ F + KD+ LA +ALG + + P+ A + + ++ +S G G DFS
Sbjct: 226 SYNPAFPLKHQQKDMRLA--LALGDENAVSMPVAAASNEAFKKARSLGLGDLDFS 278
>01_06_0663 - 30991390-30992340
Length = 316
Score = 57.6 bits (133), Expect = 7e-09
Identities = 34/81 (41%), Positives = 45/81 (55%)
Frame = +2
Query: 2 DAPVSGGVMGAQNATLAFMAGGRKEDFERSLPILKVMGAKQFHCGQIGSGQVAKLTNNML 181
DAPVSGG GA++ATL+ AGG R P+ K+MG + G G+GQ AKL N +
Sbjct: 137 DAPVSGGDRGARSATLSIFAGGDAAVVARLAPLFKLMG-NALYMGGPGAGQRAKLGNQIA 195
Query: 182 MGITGMATAECMNMGIKMGLE 244
+ T + E M K GL+
Sbjct: 196 IASTMVGLVEGMVYAHKAGLD 216
>05_07_0134 - 27911920-27912762
Length = 280
Score = 47.2 bits (107), Expect = 9e-06
Identities = 26/85 (30%), Positives = 44/85 (51%)
Frame = +2
Query: 2 DAPVSGGVMGAQNATLAFMAGGRKEDFERSLPILKVMGAKQFHCGQIGSGQVAKLTNNML 181
D+PVSGG +GA++ LA +AGG + P+ +G + + G GSGQ +K+ N +
Sbjct: 104 DSPVSGGDVGARDGALALLAGGDEAVVSWLAPLFAHLG-RPTYMGPPGSGQSSKIANQIA 162
Query: 182 MGITGMATAECMNMGIKMGLEPKFF 256
+ + +E + GL+ F
Sbjct: 163 VAGAVVGASEALAFANAAGLDAPLF 187
>01_05_0431 -
22084474-22084635,22084740-22084844,22084931-22085003,
22085109-22085179,22085429-22085548,22085631-22085715,
22085812-22085867,22085978-22086053,22086546-22086611,
22086843-22087060
Length = 343
Score = 38.3 bits (85), Expect = 0.004
Identities = 19/52 (36%), Positives = 27/52 (51%)
Frame = +3
Query: 351 YDGGFKNELMVKDLELASGMALGIRSPIPLGAVATQLYRIVQSRGYGQKDFS 506
Y F + KDL LA +A + IP A A +LY++ +S G +DFS
Sbjct: 279 YPTAFPLKHQQKDLRLALALAESVSQSIPTVAAANELYKVAKSLGLADQDFS 330
Score = 32.3 bits (70), Expect = 0.28
Identities = 15/42 (35%), Positives = 25/42 (59%)
Frame = +2
Query: 122 QFHCGQIGSGQVAKLTNNMLMGITGMATAECMNMGIKMGLEP 247
+F G +G G KL NM+MG ++ +E + + K+GL+P
Sbjct: 209 RFFLGDVGKGADMKLVVNMVMGSMMVSFSEGLLLSEKVGLDP 250
>06_01_1052 +
8312752-8312862,8312969-8313041,8313285-8313362,
8313443-8313523,8313706-8313779,8313865-8313919,
8314031-8314079,8314222-8314359,8314455-8314536,
8315131-8315209,8315357-8315400,8315479-8315673,
8316110-8316185,8317427-8317507,8317623-8317703,
8318128-8318204,8318402-8318499,8318672-8318809,
8319397-8319478,8319564-8319642,8319885-8319931,
8320014-8320228,8320330-8320450,8320529-8320648,
8320731-8320849,8320964-8321036,8321112-8321231,
8321538-8321606,8321756-8321926,8322004-8322051,
8322192-8322333,8323244-8323341,8323684-8323828,
8323928-8324013,8324112-8324222,8324456-8324530,
8324836-8324901,8325036-8325224,8325315-8325425,
8326616-8326696,8327192-8327371
Length = 1385
Score = 36.3 bits (80), Expect = 0.017
Identities = 25/84 (29%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
Frame = +2
Query: 2 DAPVSGGVMGAQNATLAFMAGGRKEDFERSLPILKVMGAKQFHC-GQIGSGQVAKLTNNM 178
DAPVSGGV A TL +K + S+ + + K + G G+ K+ N +
Sbjct: 442 DAPVSGGVKRAAEGTLT--TNMQKLVHDCSIFYVTALSEKLYVIKGGCGAASSVKMVNQL 499
Query: 179 LMGITGMATAECMNMGIKMGLEPK 250
L G+ + AE M G ++ L +
Sbjct: 500 LAGVHIASAAEAMAFGARLNLRTR 523
Score = 28.7 bits (61), Expect = 3.5
Identities = 13/43 (30%), Positives = 25/43 (58%)
Frame = +3
Query: 372 ELMVKDLELASGMALGIRSPIPLGAVATQLYRIVQSRGYGQKD 500
++ VKDL + S + R P+ + ++A QL+ + G+G+ D
Sbjct: 558 DIFVKDLGIVSHESSNARIPLHVSSIAHQLFLSGSASGWGRFD 600
>07_01_0885 + 7353926-7354770,7354845-7355487
Length = 495
Score = 30.3 bits (65), Expect = 1.1
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = +3
Query: 273 SSARSWSTEVYCPVPGLVPTAPSSRNYDGGFKNELMVKDLE 395
S+ R W E+YCPV ++ P+ + D + L + LE
Sbjct: 216 SAIRLWKVELYCPVVAMIMEHPAHQTKDEKLQFSLNYQHLE 256
>02_02_0173 - 7433744-7433775,7434002-7434241,7434548-7437410
Length = 1044
Score = 29.1 bits (62), Expect = 2.6
Identities = 18/66 (27%), Positives = 28/66 (42%)
Frame = +2
Query: 89 SLPILKVMGAKQFHCGQIGSGQVAKLTNNMLMGITGMATAECMNMGIKMGLEPKFFGRAE 268
+LP + G G + S + L NN+L G + N+ + + KF G
Sbjct: 439 ALPSNYISGTIPLEIGNLSSMSLLYLDNNLLTGSIPHTLGQLNNLVVLSLSQNKFSGEIP 498
Query: 269 QLIGSL 286
Q IG+L
Sbjct: 499 QSIGNL 504
>03_02_0556 + 9448878-9449264
Length = 128
Score = 28.7 bits (61), Expect = 3.5
Identities = 18/37 (48%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = -2
Query: 323 QSGDWTVHLGRPGASR*VVQ-HVQRTSVRVPF*CPCS 216
+SG VH G P A+ VVQ H R RVP PCS
Sbjct: 58 RSGHPGVHGGEPRAAERVVQYHPWRPRGRVPLWLPCS 94
>11_01_0119 - 931934-932359,933409-933564
Length = 193
Score = 28.3 bits (60), Expect = 4.6
Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Frame = -3
Query: 283 RADELFSTSKELRFESHFNAHVHALSCSH-SGDAHQHVIG 167
R+ +LFS K +S A VH C+H S D HV G
Sbjct: 75 RSQQLFSMRKCSVMQSSHEAEVHMSGCTHASSDRTGHVPG 114
>05_04_0247 +
19358929-19359187,19360439-19360639,19361426-19361592,
19361819-19362089,19362550-19362818
Length = 388
Score = 28.3 bits (60), Expect = 4.6
Identities = 15/50 (30%), Positives = 22/50 (44%)
Frame = -3
Query: 337 GAVGTSPGTGQYTSVDQERADELFSTSKELRFESHFNAHVHALSCSHSGD 188
G +G P + D+ + DEL +K R FN +HAL G+
Sbjct: 225 GPLGCLPQNVAFFGKDRSQLDELRCVAKHNRVAKLFNLQLHALCTKLRGE 274
>12_02_0065 -
13109652-13110746,13110843-13111762,13139462-13139528,
13139607-13139675,13139877-13140020,13140100-13140171,
13140316-13140387,13140466-13140558,13140655-13140726,
13140809-13140925
Length = 906
Score = 27.5 bits (58), Expect = 8.0
Identities = 14/32 (43%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
Frame = +2
Query: 224 GIKMGLEPKFFG-RAEQLIGSLLVDRGVLSSP 316
GIK+ E FG RA +L+G L+ +RG+ ++P
Sbjct: 552 GIKLNPEKCVFGIRAGKLLGFLVSERGIEANP 583
>08_02_0707 - 20212190-20214592
Length = 800
Score = 27.5 bits (58), Expect = 8.0
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = -3
Query: 238 SHFNAHVHALSCSHSGDAHQHVIGQFSH 155
SH ++H H+ S SHS +H HV G H
Sbjct: 497 SHSHSHSHSHSHSHS-HSHSHVHGHEDH 523
>06_01_0717 -
5219848-5220178,5220268-5220617,5221807-5221982,
5222065-5222302,5224492-5224657,5224792-5225159,
5225261-5225436,5227742-5227976,5228242-5228493,
5228513-5228848
Length = 875
Score = 27.5 bits (58), Expect = 8.0
Identities = 20/45 (44%), Positives = 22/45 (48%), Gaps = 4/45 (8%)
Frame = +2
Query: 350 LRWRLQKRT--YG*GLRISQWHGV--GYSFADPIGRCRNSALPHR 472
LRW L K T Y Q HG+ GYSF+ I CR LP R
Sbjct: 333 LRWLLSKLTEMYYKRHTPMQRHGMVPGYSFSQSILACRLGILPKR 377
>05_04_0058 +
17548945-17548947,17549234-17549281,17549618-17549695,
17549952-17550132,17550223-17550320,17550827-17551258
Length = 279
Score = 27.5 bits (58), Expect = 8.0
Identities = 12/42 (28%), Positives = 19/42 (45%)
Frame = +1
Query: 433 SHWALSQLSSTASCSPGATARKTSRCLPATERRKQKLELKLS 558
SHW L +L + P + K CLP + +L+ L+
Sbjct: 32 SHWMLDKLGGAFAPKPSSGPHKARECLPLILILRNRLKYALT 73
>01_01_1099 -
8700627-8700710,8701148-8701200,8701287-8701344,
8701886-8702032,8702386-8702448,8702559-8702630,
8703154-8703234,8703312-8703362,8703519-8703615,
8704154-8704384,8704882-8705142,8705231-8705394,
8705547-8705586,8707223-8707323
Length = 500
Score = 27.5 bits (58), Expect = 8.0
Identities = 12/26 (46%), Positives = 20/26 (76%)
Frame = -1
Query: 237 PILMPMFMHSAVAIPVMPINMLLVSL 160
PILMP+ + S + +P +PIN+LL ++
Sbjct: 161 PILMPIDL-SLIDVPRLPINLLLTTV 185
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,871,841
Number of Sequences: 37544
Number of extensions: 417326
Number of successful extensions: 1327
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1282
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1323
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1328870592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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