Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0308
         (573 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7616| Best HMM Match : NAD_binding_2 (HMM E-Value=2.00386e-43)      93   2e-19
SB_59357| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.2  
SB_13083| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.7  
SB_12239| Best HMM Match : CPSF_A (HMM E-Value=1.2)                    29   3.6  
SB_52266| Best HMM Match : DUF1665 (HMM E-Value=1.3)                   28   4.7  
SB_48199| Best HMM Match : Lig_chan (HMM E-Value=0)                    28   4.7  
SB_27339| Best HMM Match : rve (HMM E-Value=0.0016)                    28   4.7  
SB_14903| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.2  
SB_8025| Best HMM Match : MNSV_P7B (HMM E-Value=3.8)                   27   8.2  
SB_28072| Best HMM Match : VWA (HMM E-Value=0)                         27   8.2  
SB_9457| Best HMM Match : PHD (HMM E-Value=3.3e-08)                    27   8.2  

>SB_7616| Best HMM Match : NAD_binding_2 (HMM E-Value=2.00386e-43)
          Length = 270

 Score = 92.7 bits (220), Expect = 2e-19
 Identities = 40/87 (45%), Positives = 59/87 (67%)
 Frame = +2

Query: 2   DAPVSGGVMGAQNATLAFMAGGRKEDFERSLPILKVMGAKQFHCGQIGSGQVAKLTNNML 181
           DAPVSGG+  A+  TL FM GG++E FE++  +L  MG    H G  G+GQ AK+ NNML
Sbjct: 92  DAPVSGGITAAKAGTLTFMVGGKEEGFEQAKDVLMSMGKNVIHTGPNGTGQAAKICNNML 151

Query: 182 MGITGMATAECMNMGIKMGLEPKFFGR 262
           + ++ + TAE MN+GI++GL+ +   +
Sbjct: 152 LAVSMIGTAEAMNLGIRLGLDAEMIAK 178



 Score = 89.8 bits (213), Expect = 1e-18
 Identities = 40/87 (45%), Positives = 55/87 (63%)
 Frame = +3

Query: 261 VLNNSSARSWSTEVYCPVPGLVPTAPSSRNYDGGFKNELMVKDLELASGMALGIRSPIPL 440
           ++N+SS R WS+EVY PVPG++   PSS NY GGF   LM KDL LA   +    +  P+
Sbjct: 179 IINSSSGRCWSSEVYNPVPGVLEDVPSSNNYQGGFMTALMTKDLGLAQNASSSTMTATPM 238

Query: 441 GAVATQLYRIVQSRGYGQKDFSLSSSY 521
           G++A Q+YRI+  +GY   DF   S +
Sbjct: 239 GSLAHQIYRIMCIKGYANMDFGSVSKF 265


>SB_59357| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1716

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
 Frame = -1

Query: 249  FGSSPILMPMFMHSAVAIPVMPINMLLVSLATCPEPICPQ--WNCLAPITLRIGRDLSKS 76
            F    +L+P  ++  + IPVMPI +L V +  C + + P    + L  I   +G  L  S
Sbjct: 889  FSVGAVLLPSVLNPWLIIPVMPIVVLFVIIG-CMDELLPDVLLDALQLILFSVGAVLLPS 947

Query: 75   SLRP 64
             L P
Sbjct: 948  VLNP 951


>SB_13083| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 227

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -3

Query: 334 AVGTSPGTGQYTSVDQERADELFSTSKEL 248
           A+GT   TGQYT  DQ+  D+  S  + L
Sbjct: 63  AIGTCTRTGQYTRTDQKNLDKACSLERLL 91


>SB_12239| Best HMM Match : CPSF_A (HMM E-Value=1.2)
          Length = 864

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 18/62 (29%), Positives = 29/62 (46%)
 Frame = +3

Query: 276 SARSWSTEVYCPVPGLVPTAPSSRNYDGGFKNELMVKDLELASGMALGIRSPIPLGAVAT 455
           S+RSW +  +     L P +  +  Y  GF +E   + +   +G  L I +   LGAV  
Sbjct: 620 SSRSWLSYTHQSRVHLTPLSYETLEYASGFSSEQCPEGIVAIAGNTLRILALEKLGAVFN 679

Query: 456 QL 461
           Q+
Sbjct: 680 QV 681


>SB_52266| Best HMM Match : DUF1665 (HMM E-Value=1.3)
          Length = 697

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 4/62 (6%)
 Frame = +2

Query: 35  QNATLAFMAGGRKEDFERSLPILKVMGA----KQFHCGQIGSGQVAKLTNNMLMGITGMA 202
           Q AT AF  GG + D  +S P+L  +G     ++ H   +G     K  ++  +G+T + 
Sbjct: 591 QTATSAFGVGGDEMDAAKSPPVLSAIGKTILFQRDHSPGLGVTTTVKSIDSPTLGVTVVK 650

Query: 203 TA 208
            A
Sbjct: 651 NA 652


>SB_48199| Best HMM Match : Lig_chan (HMM E-Value=0)
          Length = 771

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
 Frame = +3

Query: 15  LEESWVLRTLPW---PSWPEVVKKTSKGPFLSSK*WELSSS 128
           LEES+ ++       PSWP     TS  P+L++K  +LS S
Sbjct: 166 LEESYTIQMTKCFTNPSWPVFEDSTSTSPYLTTKVSKLSHS 206


>SB_27339| Best HMM Match : rve (HMM E-Value=0.0016)
          Length = 551

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 17/59 (28%), Positives = 28/59 (47%)
 Frame = -3

Query: 328 GTSPGTGQYTSVDQERADELFSTSKELRFESHFNAHVHALSCSHSGDAHQHVIGQFSHL 152
           G+SP   +Y S     AD+  S+ ++L  E      VHA++   + D     I ++S L
Sbjct: 66  GSSPANWRYVSTSHNPADDAGSSEEDL--EVKRQVQVHAVTTGEAPDVVGDFIKRYSSL 122


>SB_14903| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 465

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 17/61 (27%), Positives = 31/61 (50%)
 Frame = +2

Query: 107 VMGAKQFHCGQIGSGQVAKLTNNMLMGITGMATAECMNMGIKMGLEPKFFGRAEQLIGSL 286
           V+GA   +CG   +G      N ++ G T  A A+C  +G+   +   +FG+ E+ + + 
Sbjct: 97  VLGAWLKYCGSAENG-----FNWVVAGQTVTAVAQCFILGVPPRIAAVWFGQNERSVATA 151

Query: 287 L 289
           L
Sbjct: 152 L 152


>SB_8025| Best HMM Match : MNSV_P7B (HMM E-Value=3.8)
          Length = 119

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = -3

Query: 292 DQERADELFSTSKELRFESHFNAHVHALSCSHSGDAHQHVIG 167
           D E  D+     K+L   +H  AH+ +LS  +  D H  V G
Sbjct: 12  DSEDDDDSVLLWKQLCHMAHVEAHITSLSSGYCKDVHGQVNG 53


>SB_28072| Best HMM Match : VWA (HMM E-Value=0)
          Length = 2979

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +3

Query: 429 PIPLGAVATQLYRIVQSRGYGQKDFS 506
           P+P+   A  L+ I  SRG  QK+FS
Sbjct: 200 PVPVKLTADVLFLIDSSRGLSQKEFS 225


>SB_9457| Best HMM Match : PHD (HMM E-Value=3.3e-08)
          Length = 344

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 12/38 (31%), Positives = 23/38 (60%)
 Frame = +2

Query: 8   PVSGGVMGAQNATLAFMAGGRKEDFERSLPILKVMGAK 121
           P+SGGV G  +AT +  + G+K   + ++  L+++  K
Sbjct: 291 PISGGVGGTSSATSSGASTGQKSSMQSAMKRLQMVKKK 328


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,301,811
Number of Sequences: 59808
Number of extensions: 411923
Number of successful extensions: 1371
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1227
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1369
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1361520496
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)