Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0308
(573 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81453-8|CAB03798.1| 299|Caenorhabditis elegans Hypothetical pr... 91 7e-19
AL031630-23|CAA21003.1| 299|Caenorhabditis elegans Hypothetical... 91 7e-19
Z81097-15|CAB03172.1| 412|Caenorhabditis elegans Hypothetical p... 30 1.3
Z70211-2|CAA94158.2| 272|Caenorhabditis elegans Hypothetical pr... 29 2.3
Z81110-5|CAN86897.1| 2882|Caenorhabditis elegans Hypothetical pr... 28 5.4
AF078784-1|AAK18967.1| 458|Caenorhabditis elegans Hypothetical ... 28 5.4
AC087079-14|AAM81101.1| 392|Caenorhabditis elegans Nuclear pore... 28 5.4
AC087079-13|AAK27866.1| 787|Caenorhabditis elegans Nuclear pore... 28 5.4
AC024859-26|AAK29977.2| 300|Caenorhabditis elegans Hypothetical... 28 5.4
Z81125-10|CAB03385.3| 3102|Caenorhabditis elegans Hypothetical p... 27 7.2
AL008585-1|CAA15432.3| 3102|Caenorhabditis elegans Hypothetical ... 27 7.2
AF074902-1|AAC26793.1| 3102|Caenorhabditis elegans laminin alpha... 27 7.2
U23523-4|AAC46557.1| 83|Caenorhabditis elegans Hypothetical pr... 27 9.5
U00036-1|AAK29855.1| 152|Caenorhabditis elegans Hypothetical pr... 27 9.5
EF473218-1|ABQ42570.1| 765|Caenorhabditis elegans Y55D9A.1c pro... 27 9.5
EF473217-1|ABQ42569.1| 818|Caenorhabditis elegans Y55D9A.1b pro... 27 9.5
AL032649-5|CAM82814.1| 765|Caenorhabditis elegans Hypothetical ... 27 9.5
AL032649-2|CAC70120.1| 818|Caenorhabditis elegans Hypothetical ... 27 9.5
AL032649-1|CAA21701.1| 816|Caenorhabditis elegans Hypothetical ... 27 9.5
AF303258-1|AAG50216.1| 152|Caenorhabditis elegans 3H288 protein. 27 9.5
AF148954-1|AAD37411.1| 4280|Caenorhabditis elegans myotactin for... 27 9.5
AF148953-1|AAD37410.1| 4450|Caenorhabditis elegans myotactin for... 27 9.5
AF040648-5|AAK21413.1| 4450|Caenorhabditis elegans Lethal protei... 27 9.5
AF040648-4|AAK21414.2| 4280|Caenorhabditis elegans Lethal protei... 27 9.5
AC006708-23|AAF60414.1| 975|Caenorhabditis elegans Paz/piwi dom... 27 9.5
>Z81453-8|CAB03798.1| 299|Caenorhabditis elegans Hypothetical
protein B0250.5 protein.
Length = 299
Score = 90.6 bits (215), Expect = 7e-19
Identities = 44/84 (52%), Positives = 57/84 (67%), Gaps = 1/84 (1%)
Frame = +2
Query: 2 DAPVSGGVMGAQNATLAFMAG-GRKEDFERSLPILKVMGAKQFHCGQIGSGQVAKLTNNM 178
DAP+SGGV GAQ ATL FM G G F+R+ +L +MG + G +G+G AK+ NNM
Sbjct: 118 DAPISGGVTGAQQATLTFMVGAGNDATFKRAEAVLSLMGKNIVNLGAVGNGTAAKICNNM 177
Query: 179 LMGITGMATAECMNMGIKMGLEPK 250
L+GI +A AE MN+GI MGL+ K
Sbjct: 178 LLGIQMVAVAETMNLGISMGLDAK 201
Score = 82.2 bits (194), Expect = 2e-16
Identities = 37/84 (44%), Positives = 53/84 (63%), Gaps = 1/84 (1%)
Frame = +3
Query: 261 VLNNSSARSWSTEVYCPVPGLVPTAPSSRNYDGGFKNELMVKDLELASGMALGIRSPIPL 440
++N SS R WS++ Y PVPG++ PS R Y GGF LM KDL LA + ++P P+
Sbjct: 206 IVNTSSGRCWSSDTYNPVPGVIENIPSCRGYAGGFGTTLMAKDLSLAQNASTNTQAPTPM 265
Query: 441 GAVATQLYRIV-QSRGYGQKDFSL 509
G++A Q+YRI+ + Y KDF +
Sbjct: 266 GSLAHQIYRILARDPQYQAKDFGV 289
>AL031630-23|CAA21003.1| 299|Caenorhabditis elegans Hypothetical
protein B0250.5 protein.
Length = 299
Score = 90.6 bits (215), Expect = 7e-19
Identities = 44/84 (52%), Positives = 57/84 (67%), Gaps = 1/84 (1%)
Frame = +2
Query: 2 DAPVSGGVMGAQNATLAFMAG-GRKEDFERSLPILKVMGAKQFHCGQIGSGQVAKLTNNM 178
DAP+SGGV GAQ ATL FM G G F+R+ +L +MG + G +G+G AK+ NNM
Sbjct: 118 DAPISGGVTGAQQATLTFMVGAGNDATFKRAEAVLSLMGKNIVNLGAVGNGTAAKICNNM 177
Query: 179 LMGITGMATAECMNMGIKMGLEPK 250
L+GI +A AE MN+GI MGL+ K
Sbjct: 178 LLGIQMVAVAETMNLGISMGLDAK 201
Score = 82.2 bits (194), Expect = 2e-16
Identities = 37/84 (44%), Positives = 53/84 (63%), Gaps = 1/84 (1%)
Frame = +3
Query: 261 VLNNSSARSWSTEVYCPVPGLVPTAPSSRNYDGGFKNELMVKDLELASGMALGIRSPIPL 440
++N SS R WS++ Y PVPG++ PS R Y GGF LM KDL LA + ++P P+
Sbjct: 206 IVNTSSGRCWSSDTYNPVPGVIENIPSCRGYAGGFGTTLMAKDLSLAQNASTNTQAPTPM 265
Query: 441 GAVATQLYRIV-QSRGYGQKDFSL 509
G++A Q+YRI+ + Y KDF +
Sbjct: 266 GSLAHQIYRILARDPQYQAKDFGV 289
>Z81097-15|CAB03172.1| 412|Caenorhabditis elegans Hypothetical
protein K07A1.11 protein.
Length = 412
Score = 29.9 bits (64), Expect = 1.3
Identities = 14/35 (40%), Positives = 15/35 (42%)
Frame = +3
Query: 231 KWDSNRSSLDVLNNSSARSWSTEVYCPVPGLVPTA 335
KWDS R SA W TE+ PG V A
Sbjct: 91 KWDSEREEFGGYGEGSAAKWDTEIKINHPGEVHRA 125
>Z70211-2|CAA94158.2| 272|Caenorhabditis elegans Hypothetical
protein K11E4.2 protein.
Length = 272
Score = 29.1 bits (62), Expect = 2.3
Identities = 15/62 (24%), Positives = 26/62 (41%)
Frame = -3
Query: 349 FLLDGAVGTSPGTGQYTSVDQERADELFSTSKELRFESHFNAHVHALSCSHSGDAHQHVI 170
F+LD + + T + SVD+ R + LR + + L+C H +H+
Sbjct: 150 FMLDNDIALNDLTTKLRSVDERRHNNALQLETRLRSTQEYRYTPNMLACYHGPLSHEDAC 209
Query: 169 GQ 164
Q
Sbjct: 210 RQ 211
>Z81110-5|CAN86897.1| 2882|Caenorhabditis elegans Hypothetical
protein T01D3.7 protein.
Length = 2882
Score = 27.9 bits (59), Expect = 5.4
Identities = 11/42 (26%), Positives = 23/42 (54%)
Frame = +3
Query: 366 KNELMVKDLELASGMALGIRSPIPLGAVATQLYRIVQSRGYG 491
+++L++K++++ +G GI P G + Q + GYG
Sbjct: 459 RDDLLIKNVKIQNGAGSGIDFMTPTGNIELQNIEVKNMGGYG 500
>AF078784-1|AAK18967.1| 458|Caenorhabditis elegans Hypothetical
protein H34I24.2 protein.
Length = 458
Score = 27.9 bits (59), Expect = 5.4
Identities = 20/69 (28%), Positives = 29/69 (42%)
Frame = -1
Query: 327 APVRGLDSTPRSTRSEPMSCSARPKNFGSSPILMPMFMHSAVAIPVMPINMLLVSLATCP 148
APV + + +T +EP S SA P G S + SA P+ + SL
Sbjct: 74 APVSTVSPSSGATTAEPSSSSAAPVTSGGSTV-------SAGPTTPAPLPNVTYSLLQFS 126
Query: 147 EPICPQWNC 121
P+C +C
Sbjct: 127 SPVCVDASC 135
>AC087079-14|AAM81101.1| 392|Caenorhabditis elegans Nuclear pore
complex protein protein13, isoform b protein.
Length = 392
Score = 27.9 bits (59), Expect = 5.4
Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
Frame = +2
Query: 17 GGVMGAQNATLAFMAGGRKEDFERSLPILKVMGAKQ--FHCGQIGSGQVAKLTNNMLMGI 190
GG+ G + AF+ G +E F+ + M Q +HC + G + A T N L
Sbjct: 265 GGIPGTRGLVNAFLKVGTEESFQPEDDSIDGMPTWQVTYHCVRAGDMKSASETLNRLKSF 324
Query: 191 TGMAT 205
AT
Sbjct: 325 PQCAT 329
>AC087079-13|AAK27866.1| 787|Caenorhabditis elegans Nuclear pore
complex protein protein13, isoform a protein.
Length = 787
Score = 27.9 bits (59), Expect = 5.4
Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
Frame = +2
Query: 17 GGVMGAQNATLAFMAGGRKEDFERSLPILKVMGAKQ--FHCGQIGSGQVAKLTNNMLMGI 190
GG+ G + AF+ G +E F+ + M Q +HC + G + A T N L
Sbjct: 265 GGIPGTRGLVNAFLKVGTEESFQPEDDSIDGMPTWQVTYHCVRAGDMKSASETLNRLKSF 324
Query: 191 TGMAT 205
AT
Sbjct: 325 PQCAT 329
>AC024859-26|AAK29977.2| 300|Caenorhabditis elegans Hypothetical
protein Y71H2AM.2 protein.
Length = 300
Score = 27.9 bits (59), Expect = 5.4
Identities = 16/42 (38%), Positives = 22/42 (52%)
Frame = -1
Query: 186 PINMLLVSLATCPEPICPQWNCLAPITLRIGRDLSKSSLRPP 61
P N LL+ A+ CP+ NC ITL RD +++R P
Sbjct: 103 PCNCLLICKASSTRIACPRNNCRRVITLAGQRD-PGTAIRAP 143
>Z81125-10|CAB03385.3| 3102|Caenorhabditis elegans Hypothetical
protein T22A3.8 protein.
Length = 3102
Score = 27.5 bits (58), Expect = 7.2
Identities = 11/25 (44%), Positives = 12/25 (48%)
Frame = +1
Query: 436 HWALSQLSSTASCSPGATARKTSRC 510
H A + LS C PG T R S C
Sbjct: 1656 HGACNPLSGQCECKPGVTGRTCSMC 1680
>AL008585-1|CAA15432.3| 3102|Caenorhabditis elegans Hypothetical
protein T22A3.8 protein.
Length = 3102
Score = 27.5 bits (58), Expect = 7.2
Identities = 11/25 (44%), Positives = 12/25 (48%)
Frame = +1
Query: 436 HWALSQLSSTASCSPGATARKTSRC 510
H A + LS C PG T R S C
Sbjct: 1656 HGACNPLSGQCECKPGVTGRTCSMC 1680
>AF074902-1|AAC26793.1| 3102|Caenorhabditis elegans laminin alpha
chain protein.
Length = 3102
Score = 27.5 bits (58), Expect = 7.2
Identities = 11/25 (44%), Positives = 12/25 (48%)
Frame = +1
Query: 436 HWALSQLSSTASCSPGATARKTSRC 510
H A + LS C PG T R S C
Sbjct: 1656 HGACNPLSGQCECKPGVTGRTCSMC 1680
>U23523-4|AAC46557.1| 83|Caenorhabditis elegans Hypothetical
protein F53A9.2 protein.
Length = 83
Score = 27.1 bits (57), Expect = 9.5
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +1
Query: 163 TDQ*HVDGHHRNGYS*VHEHGH 228
TD H GHH + +S +HE GH
Sbjct: 37 TDGGHHHGHHHHHHSFLHELGH 58
>U00036-1|AAK29855.1| 152|Caenorhabditis elegans Hypothetical
protein R151.9 protein.
Length = 152
Score = 27.1 bits (57), Expect = 9.5
Identities = 17/48 (35%), Positives = 26/48 (54%)
Frame = -3
Query: 394 SKSLTISSFLKPPS*FLLDGAVGTSPGTGQYTSVDQERADELFSTSKE 251
S+SL I + L PS L++ GTG + +D+E+A +F KE
Sbjct: 70 SESLYIRAELSDPSKHLVE------IGTGYFVELDREKAKAIFDRKKE 111
>EF473218-1|ABQ42570.1| 765|Caenorhabditis elegans Y55D9A.1c
protein.
Length = 765
Score = 27.1 bits (57), Expect = 9.5
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = -1
Query: 219 FMHSAVAIPVMPINMLLVSLATCPEPICPQWNCLAPITLRI 97
F+ +A + P +P+ + T P P P+ CLAPIT ++
Sbjct: 625 FVAAAFSSPTLPLPVTSKP-ETAPMPRLPRIPCLAPITKQL 664
>EF473217-1|ABQ42569.1| 818|Caenorhabditis elegans Y55D9A.1b
protein.
Length = 818
Score = 27.1 bits (57), Expect = 9.5
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = -1
Query: 219 FMHSAVAIPVMPINMLLVSLATCPEPICPQWNCLAPITLRI 97
F+ +A + P +P+ + T P P P+ CLAPIT ++
Sbjct: 678 FVAAAFSSPTLPLPVTSKP-ETAPMPRLPRIPCLAPITKQL 717
>AL032649-5|CAM82814.1| 765|Caenorhabditis elegans Hypothetical
protein Y55D9A.1c protein.
Length = 765
Score = 27.1 bits (57), Expect = 9.5
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = -1
Query: 219 FMHSAVAIPVMPINMLLVSLATCPEPICPQWNCLAPITLRI 97
F+ +A + P +P+ + T P P P+ CLAPIT ++
Sbjct: 625 FVAAAFSSPTLPLPVTSKP-ETAPMPRLPRIPCLAPITKQL 664
>AL032649-2|CAC70120.1| 818|Caenorhabditis elegans Hypothetical
protein Y55D9A.1b protein.
Length = 818
Score = 27.1 bits (57), Expect = 9.5
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = -1
Query: 219 FMHSAVAIPVMPINMLLVSLATCPEPICPQWNCLAPITLRI 97
F+ +A + P +P+ + T P P P+ CLAPIT ++
Sbjct: 678 FVAAAFSSPTLPLPVTSKP-ETAPMPRLPRIPCLAPITKQL 717
>AL032649-1|CAA21701.1| 816|Caenorhabditis elegans Hypothetical
protein Y55D9A.1a protein.
Length = 816
Score = 27.1 bits (57), Expect = 9.5
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = -1
Query: 219 FMHSAVAIPVMPINMLLVSLATCPEPICPQWNCLAPITLRI 97
F+ +A + P +P+ + T P P P+ CLAPIT ++
Sbjct: 676 FVAAAFSSPTLPLPVTSKP-ETAPMPRLPRIPCLAPITKQL 715
>AF303258-1|AAG50216.1| 152|Caenorhabditis elegans 3H288 protein.
Length = 152
Score = 27.1 bits (57), Expect = 9.5
Identities = 17/48 (35%), Positives = 26/48 (54%)
Frame = -3
Query: 394 SKSLTISSFLKPPS*FLLDGAVGTSPGTGQYTSVDQERADELFSTSKE 251
S+SL I + L PS L++ GTG + +D+E+A +F KE
Sbjct: 70 SESLYIRAELSDPSKHLVE------IGTGYFVELDREKAKAIFDRKKE 111
>AF148954-1|AAD37411.1| 4280|Caenorhabditis elegans myotactin form A
protein.
Length = 4280
Score = 27.1 bits (57), Expect = 9.5
Identities = 13/50 (26%), Positives = 23/50 (46%)
Frame = +3
Query: 198 WLQLSA*TWALKWDSNRSSLDVLNNSSARSWSTEVYCPVPGLVPTAPSSR 347
W TW + D+ +D +N +S +W+ P +VPT P ++
Sbjct: 2955 WTPPEESTW--RCDNVEYLIDFVNTTSRGNWTVSTDAPSELIVPTQPGTK 3002
>AF148953-1|AAD37410.1| 4450|Caenorhabditis elegans myotactin form B
protein.
Length = 4450
Score = 27.1 bits (57), Expect = 9.5
Identities = 13/50 (26%), Positives = 23/50 (46%)
Frame = +3
Query: 198 WLQLSA*TWALKWDSNRSSLDVLNNSSARSWSTEVYCPVPGLVPTAPSSR 347
W TW + D+ +D +N +S +W+ P +VPT P ++
Sbjct: 2955 WTPPEESTW--RCDNVEYLIDFVNTTSRGNWTVSTDAPSELIVPTQPGTK 3002
>AF040648-5|AAK21413.1| 4450|Caenorhabditis elegans Lethal protein
805, isoform b protein.
Length = 4450
Score = 27.1 bits (57), Expect = 9.5
Identities = 13/50 (26%), Positives = 23/50 (46%)
Frame = +3
Query: 198 WLQLSA*TWALKWDSNRSSLDVLNNSSARSWSTEVYCPVPGLVPTAPSSR 347
W TW + D+ +D +N +S +W+ P +VPT P ++
Sbjct: 2955 WTPPEESTW--RCDNVEYLIDFVNTTSRGNWTVSTDAPSELIVPTQPGTK 3002
>AF040648-4|AAK21414.2| 4280|Caenorhabditis elegans Lethal protein
805, isoform a protein.
Length = 4280
Score = 27.1 bits (57), Expect = 9.5
Identities = 13/50 (26%), Positives = 23/50 (46%)
Frame = +3
Query: 198 WLQLSA*TWALKWDSNRSSLDVLNNSSARSWSTEVYCPVPGLVPTAPSSR 347
W TW + D+ +D +N +S +W+ P +VPT P ++
Sbjct: 2955 WTPPEESTW--RCDNVEYLIDFVNTTSRGNWTVSTDAPSELIVPTQPGTK 3002
>AC006708-23|AAF60414.1| 975|Caenorhabditis elegans Paz/piwi
domain-containing protein2 protein.
Length = 975
Score = 27.1 bits (57), Expect = 9.5
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Frame = +2
Query: 44 TLAFMAGGRKEDFERSLPILKVMGAK-QFHCGQIGSGQVAKLTNNMLMGITGMATAEC 214
TL F+ G + ++ P + + G K FH Q+ +++ +T+N+ GITG C
Sbjct: 298 TLQFIEGPYGRN--QNNPSIVIDGMKVAFHMEQLVFQKLSSITSNLANGITGSERERC 353
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,941,382
Number of Sequences: 27780
Number of extensions: 305002
Number of successful extensions: 844
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 802
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 842
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1184216096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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