Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0308
         (573 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    24   0.93 
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             24   0.93 
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   3.8  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    22   3.8  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    22   5.0  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   6.6  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    21   8.7  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          21   8.7  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 24.2 bits (50), Expect = 0.93
 Identities = 16/48 (33%), Positives = 20/48 (41%), Gaps = 1/48 (2%)
 Frame = -1

Query: 363 SRHRNFYSTERWAPVRGLDSTPRSTRSEPMS-CSARPKNFGSSPILMP 223
           S + N  S  +     G   +  S RSE    C  RP  FGSS   +P
Sbjct: 15  SGYSNTCSNSQSQRSSGSSISRNSNRSESSGYCGRRPSTFGSSNEALP 62


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 24.2 bits (50), Expect = 0.93
 Identities = 16/48 (33%), Positives = 20/48 (41%), Gaps = 1/48 (2%)
 Frame = -1

Query: 363 SRHRNFYSTERWAPVRGLDSTPRSTRSEPMS-CSARPKNFGSSPILMP 223
           S + N  S  +     G   +  S RSE    C  RP  FGSS   +P
Sbjct: 15  SGYSNTCSNSQSQRSSGSSISRNSNRSESSGYCGRRPSTFGSSNEALP 62


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -3

Query: 70   TTSGHEGQGSVLSTHDS 20
            T SGH G G +L+ +D+
Sbjct: 1927 TGSGHGGHGGLLTPYDT 1943


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 9/27 (33%), Positives = 19/27 (70%)
 Frame = -1

Query: 501 SLSGRSPWTARCGRAELRQRPMGSANE 421
           +++ RSP  A  G +++RQRP+  +++
Sbjct: 910 NVTPRSPGRAWPGDSDIRQRPIPRSDD 936


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 12/41 (29%), Positives = 19/41 (46%)
 Frame = -3

Query: 415 NAMPLANSKSLTISSFLKPPS*FLLDGAVGTSPGTGQYTSV 293
           NA  +  S+       LKP + + +     T+ G G+YT V
Sbjct: 469 NATVIQTSELSATFKGLKPSTDYAIQVRAKTTRGWGEYTPV 509


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 9/23 (39%), Positives = 11/23 (47%)
 Frame = -1

Query: 246  GSSPILMPMFMHSAVAIPVMPIN 178
            G + I MP FM     +P  P N
Sbjct: 1140 GPNGIKMPSFMEGMPHLPFTPFN 1162


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -1

Query: 261 RPKNFGSSPILMPMFMHSAVAIPVMPINM 175
           RP NFG  P+L+ M +  A    +  +NM
Sbjct: 53  RP-NFGGEPLLVGMDLTIASFDAISEVNM 80


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 8/10 (80%), Positives = 9/10 (90%)
 Frame = +3

Query: 429 PIPLGAVATQ 458
           P PLGAVAT+
Sbjct: 141 PTPLGAVATE 150


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,628
Number of Sequences: 438
Number of extensions: 3709
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16504155
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)