Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0308
(573 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g20930.1 68417.m03033 3-hydroxyisobutyrate dehydrogenase, put... 81 4e-16
At1g17650.1 68414.m02185 6-phosphogluconate dehydrogenase NAD-bi... 67 9e-12
At4g29120.1 68417.m04168 6-phosphogluconate dehydrogenase NAD-bi... 60 8e-10
At3g25530.1 68416.m03174 6-phosphogluconate dehydrogenase NAD-bi... 60 8e-10
At1g71170.1 68414.m08212 6-phosphogluconate dehydrogenase NAD-bi... 60 8e-10
At1g71180.1 68414.m08213 6-phosphogluconate dehydrogenase NAD-bi... 52 2e-07
At1g18270.1 68414.m02280 ketose-bisphosphate aldolase class-II f... 51 5e-07
At1g28690.1 68414.m03533 pentatricopeptide (PPR) repeat-containi... 32 0.24
At5g62430.1 68418.m07835 Dof-type zinc finger domain-containing ... 29 1.7
At5g03430.1 68418.m00296 phosphoadenosine phosphosulfate (PAPS) ... 29 1.7
At4g29700.1 68417.m04230 type I phosphodiesterase/nucleotide pyr... 29 1.7
At4g08480.1 68417.m01399 mitogen-activated protein kinase, putat... 29 1.7
At4g23390.1 68417.m03372 expressed protein contains Pfam profi... 29 2.9
At3g58620.1 68416.m06533 tetratricopeptide repeat (TPR)-containi... 28 3.8
At1g69420.2 68414.m07975 zinc finger (DHHC type) family protein ... 28 5.1
At1g69420.1 68414.m07974 zinc finger (DHHC type) family protein ... 28 5.1
At4g23360.1 68417.m03369 expressed protein predicted proteins, A... 27 6.7
At4g04370.1 68417.m00624 pentatricopeptide (PPR) repeat-containi... 27 6.7
At3g61680.1 68416.m06912 lipase class 3 family protein contains ... 27 6.7
At2g27700.1 68415.m03356 eukaryotic translation initiation facto... 27 6.7
At5g11700.1 68418.m01367 glycine-rich protein predicted protein,... 27 8.9
At2g31740.1 68415.m03876 expressed protein 27 8.9
At1g47730.1 68414.m05306 F-box family protein contains Pfam PF00... 27 8.9
>At4g20930.1 68417.m03033 3-hydroxyisobutyrate dehydrogenase,
putative similar to SP|P29266 3-hydroxyisobutyrate
dehydrogenase, mitochondrial precursor (EC 1.1.1.31)
{Rattus norvegicus}; contains Pfam profile PF03446: NAD
binding domain of 6-phosphogluconate dehydrogenase
Length = 347
Score = 81.4 bits (192), Expect = 4e-16
Identities = 38/83 (45%), Positives = 55/83 (66%)
Frame = +3
Query: 258 DVLNNSSARSWSTEVYCPVPGLVPTAPSSRNYDGGFKNELMVKDLELASGMALGIRSPIP 437
+VLN SS R WS++ Y PVPG++ PSSR+Y+GGF ++LM KDL LA+ A + P
Sbjct: 252 EVLNTSSGRCWSSDAYNPVPGVMKGVPSSRDYNGGFASKLMAKDLNLAAASAEEVGHKSP 311
Query: 438 LGAVATQLYRIVQSRGYGQKDFS 506
L + A ++Y+ + G+ KDFS
Sbjct: 312 LISKAQEIYKKMCEEGHETKDFS 334
Score = 77.4 bits (182), Expect = 6e-15
Identities = 33/80 (41%), Positives = 52/80 (65%)
Frame = +2
Query: 2 DAPVSGGVMGAQNATLAFMAGGRKEDFERSLPILKVMGAKQFHCGQIGSGQVAKLTNNML 181
DAPVSGGV+ A+ TL FM GG ++ + + PIL+ MG +CG G+G AK+ NN+
Sbjct: 166 DAPVSGGVLAAEAGTLTFMVGGPEDAYLAARPILQSMGRTSIYCGGSGNGSAAKICNNLA 225
Query: 182 MGITGMATAECMNMGIKMGL 241
M ++ + T+E + +G +G+
Sbjct: 226 MAVSMLGTSEALALGQSLGI 245
>At1g17650.1 68414.m02185 6-phosphogluconate dehydrogenase
NAD-binding domain-containing protein low similarity to
SP|P23523 2-hydroxy-3-oxopropionate reductase (EC
1.1.1.60) (Tartronate semialdehyde reductase)
{Escherichia coli}; contains Pfam profile PF03446: NAD
binding domain of 6-phosphogluconate dehydrogenase
Length = 343
Score = 66.9 bits (156), Expect = 9e-12
Identities = 31/82 (37%), Positives = 50/82 (60%)
Frame = +2
Query: 2 DAPVSGGVMGAQNATLAFMAGGRKEDFERSLPILKVMGAKQFHCGQIGSGQVAKLTNNML 181
+APVSG A++ L F+ G K +E++ P L +MG +F+ G++G+G KL NM+
Sbjct: 168 EAPVSGSKKPAEDGQLIFLTAGDKPLYEKAAPFLDIMGKSKFYLGEVGNGAAMKLVVNMI 227
Query: 182 MGITGMATAECMNMGIKMGLEP 247
MG + AE + + K+GL+P
Sbjct: 228 MGSMMASFAEGILLSQKVGLDP 249
Score = 40.3 bits (90), Expect = 9e-04
Identities = 18/52 (34%), Positives = 28/52 (53%)
Frame = +3
Query: 351 YDGGFKNELMVKDLELASGMALGIRSPIPLGAVATQLYRIVQSRGYGQKDFS 506
Y F + KD+ LA G+A + P+ A A +LY++ +S G +DFS
Sbjct: 278 YPTAFPLKHQQKDMRLALGLAESVSQSTPIAAAANELYKVAKSYGLSDEDFS 329
>At4g29120.1 68417.m04168 6-phosphogluconate dehydrogenase
NAD-binding domain-containing protein similar to
SP|P23523 2-hydroxy-3-oxopropionate reductase (EC
1.1.1.60) (Tartronate semialdehyde reductase)
{Escherichia coli}; contains Pfam profile PF03446: NAD
binding domain of 6-phosphogluconate dehydrogenase
Length = 334
Score = 60.5 bits (140), Expect = 8e-10
Identities = 34/85 (40%), Positives = 46/85 (54%)
Frame = +2
Query: 2 DAPVSGGVMGAQNATLAFMAGGRKEDFERSLPILKVMGAKQFHCGQIGSGQVAKLTNNML 181
DAPVSGG +GA+N L+ AGG + +R P+ +MG F G G GQ AKL N +
Sbjct: 155 DAPVSGGDLGAKNGKLSIFAGGDETTVKRLDPLFSLMGKVNF-MGTSGKGQFAKLANQIT 213
Query: 182 MGITGMATAECMNMGIKMGLEPKFF 256
+ T + E + K GL+ K F
Sbjct: 214 IASTMLGLVEGLIYAHKAGLDVKKF 238
Score = 27.5 bits (58), Expect = 6.7
Identities = 16/49 (32%), Positives = 25/49 (51%)
Frame = +3
Query: 345 RNYDGGFKNELMVKDLELASGMALGIRSPIPLGAVATQLYRIVQSRGYG 491
R++D GF VKDL + + +P A+A QLY +++ G G
Sbjct: 262 RDFDPGFYVNHFVKDLGICLNECQRMGLALPGLALAQQLYLSLKAHGEG 310
>At3g25530.1 68416.m03174 6-phosphogluconate dehydrogenase
NAD-binding domain-containing protein low similarity to
SP|P23523 2-hydroxy-3-oxopropionate reductase (EC
1.1.1.60) (Tartronate semialdehyde reductase)
{Escherichia coli}; contains Pfam profile PF03446: NAD
binding domain of 6-phosphogluconate dehydrogenase;
supporting cDNA gi|15375067|gb|AY044183.1|
Length = 289
Score = 60.5 bits (140), Expect = 8e-10
Identities = 31/80 (38%), Positives = 45/80 (56%)
Frame = +2
Query: 2 DAPVSGGVMGAQNATLAFMAGGRKEDFERSLPILKVMGAKQFHCGQIGSGQVAKLTNNML 181
+ PVSG A++ L +A G K FE S+P V+G + F+ GQ+G+G KL NM+
Sbjct: 117 EGPVSGSKKPAEDGQLIILAAGDKALFEESIPAFDVLGKRSFYLGQVGNGAKMKLIVNMI 176
Query: 182 MGITGMATAECMNMGIKMGL 241
MG A +E + + K GL
Sbjct: 177 MGSMMNAFSEGLVLADKSGL 196
Score = 28.7 bits (61), Expect = 2.9
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Frame = +3
Query: 348 NYDGGFKNELMVKDLELASGMALGIRSPI--PLGAVATQLYRIVQSRGYGQKDFS 506
+Y F + KD+ LA +ALG + + P+ A A + ++ +S G G DFS
Sbjct: 226 SYPPAFPLKHQQKDMRLA--LALGDENAVSMPVAAAANEAFKKARSLGLGDLDFS 278
>At1g71170.1 68414.m08212 6-phosphogluconate dehydrogenase
NAD-binding domain-containing protein contains Pfam
profile: PF03446 NAD binding domain of
6-phosphogluconate
Length = 299
Score = 60.5 bits (140), Expect = 8e-10
Identities = 34/82 (41%), Positives = 44/82 (53%)
Frame = +2
Query: 2 DAPVSGGVMGAQNATLAFMAGGRKEDFERSLPILKVMGAKQFHCGQIGSGQVAKLTNNML 181
DAPVSGG GA+ L AGG E E P++K MG +F G GSGQ K+ N +
Sbjct: 130 DAPVSGGDAGAREGKLTIFAGGDSEIVEWLAPVMKTMGIVRF-MGGAGSGQSCKIGNQIC 188
Query: 182 MGITGMATAECMNMGIKMGLEP 247
+G + AE + K GL+P
Sbjct: 189 VGSNMIGLAEGIVFAEKAGLDP 210
>At1g71180.1 68414.m08213 6-phosphogluconate dehydrogenase
NAD-binding domain-containing protein similar to
SP|P23523 2-hydroxy-3-oxopropionate reductase (EC
1.1.1.60) (Tartronate semialdehyde reductase)
{Escherichia coli}; contains Pfam profile PF03446: NAD
binding domain of 6-phosphogluconate dehydrogenase
Length = 318
Score = 52.4 bits (120), Expect = 2e-07
Identities = 31/81 (38%), Positives = 42/81 (51%)
Frame = +2
Query: 2 DAPVSGGVMGAQNATLAFMAGGRKEDFERSLPILKVMGAKQFHCGQIGSGQVAKLTNNML 181
DAPVSGG GA+ TL AGG E E P++K +G + G+ GSGQ K+ N +
Sbjct: 151 DAPVSGGDAGAREGTLGIFAGGDSEIVEWLSPVMKNIGTVTY-MGEAGSGQSCKIGNQIA 209
Query: 182 MGITGMATAECMNMGIKMGLE 244
+ AE + K GL+
Sbjct: 210 GASNLVGLAEGIVFAEKAGLD 230
>At1g18270.1 68414.m02280 ketose-bisphosphate aldolase class-II
family protein low similarity to KbaY
(tagatose-1,6-bisphosphate aldolase) [Escherichia coli]
GI:8895753; contains Pfam profile PF01116:
Fructose-bisphosphate aldolase class-II
Length = 1373
Score = 51.2 bits (117), Expect = 5e-07
Identities = 29/84 (34%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Frame = +2
Query: 2 DAPVSGGVMGAQNATLAFMAGGRKEDFERSLPILKVMGAKQFHC-GQIGSGQVAKLTNNM 178
DAPVSGGV A L MA G E + + +L + K + G G+G K+ N +
Sbjct: 440 DAPVSGGVKRAAMGELTIMASGTDEALKSAGLVLSALSEKLYVIKGGCGAGSGVKMVNQL 499
Query: 179 LMGITGMATAECMNMGIKMGLEPK 250
L G+ + AE M G ++GL +
Sbjct: 500 LAGVHIASAAEAMAFGARLGLNTR 523
Score = 46.0 bits (104), Expect = 2e-05
Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Frame = +2
Query: 2 DAPVSGGVMGAQNATLAFMAGGRKEDFERSLPILKVMGAKQFHC-GQIGSGQVAKLTNNM 178
DA V G+ + L +A GR + R+ P L M + G+IG+G K+ N +
Sbjct: 121 DAYVLKGMSELLDGKLMIIASGRSDSITRAQPYLTAMCQNLYTFEGEIGAGSKVKMVNEL 180
Query: 179 LMGITGMATAECMNMGIKMGLEP 247
L GI +A E +++G + G+ P
Sbjct: 181 LEGIHLVAAVEAISLGSQAGVHP 203
Score = 29.5 bits (63), Expect = 1.7
Identities = 22/87 (25%), Positives = 40/87 (45%)
Frame = +3
Query: 240 SNRSSLDVLNNSSARSWSTEVYCPVPGLVPTAPSSRNYDGGFKNELMVKDLELASGMALG 419
+ R +V++NS SW E VP ++ +Y ++ VKDL + +
Sbjct: 521 NTRKLFNVISNSGGTSWMFENR--VPHML-----DNDYTPYSALDIFVKDLGIVTREGSS 573
Query: 420 IRSPIPLGAVATQLYRIVQSRGYGQKD 500
+ P+ + VA QL+ + G+G+ D
Sbjct: 574 RKVPLHISTVAHQLFLAGSAAGWGRID 600
>At1g28690.1 68414.m03533 pentatricopeptide (PPR) repeat-containing
protein contains six TIGRFAM TIGR00756:
pentatricopeptide repeat domains; contains five Pfam
PF01535: PPR repeats
Length = 520
Score = 32.3 bits (70), Expect = 0.24
Identities = 20/46 (43%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Frame = -3
Query: 325 TSPGTGQYTSVDQERADELFSTSKELRFESHFNAHVHALS-CSHSG 191
TS G + + E A ELF+ KE R E ++ + ALS CSHSG
Sbjct: 343 TSMIDGYGKNGNPEEALELFTRMKEFRIEPNYVTFLGALSACSHSG 388
>At5g62430.1 68418.m07835 Dof-type zinc finger domain-containing
protein similar to H-protein promoter binding factor-2a
GI:3386546 from [Arabidopsis thaliana]
Length = 237
Score = 29.5 bits (63), Expect = 1.7
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = +1
Query: 400 PVAWRWVFVR-RSHWALSQLSSTASCSPGATARKTSRCLPATERRKQK 540
P W F +W++ LSS S SP +T K SR T ++KQ+
Sbjct: 115 PYTWNPAFYPVYPYWSMPVLSSPVSSSPTSTLGKHSRDEDETVKQKQR 162
>At5g03430.1 68418.m00296 phosphoadenosine phosphosulfate (PAPS)
reductase family protein low similarity to SP|P38913 FAD
synthetase (EC 2.7.7.2) {Saccharomyces cerevisiae};
contains Pfam profiles PF01507: Phosphoadenosine
phosphosulfate reductase family, PF00994: Probable
molybdopterin binding domain
Length = 497
Score = 29.5 bits (63), Expect = 1.7
Identities = 14/49 (28%), Positives = 25/49 (51%)
Frame = -1
Query: 213 HSAVAIPVMPINMLLVSLATCPEPICPQWNCLAPITLRIGRDLSKSSLR 67
H +++P++ ++V AT E + +W CL +T G L + S R
Sbjct: 379 HEKLSVPLIKCRNVIVLAATNTEELEKEWECLTELTKLGGGSLIEYSSR 427
>At4g29700.1 68417.m04230 type I phosphodiesterase/nucleotide
pyrophosphatase family protein similar to SP|P22413
Ectonucleotide pyrophosphatase/phosphodiesterase 1
(Plasma-cell membrane glycoprotein PC-1) [Includes:
Alkaline phosphodiesterase I (EC 3.1.4.1); Nucleotide
pyrophosphatase (EC 3.6.1.9) {Homo sapiens}; contains
Pfam profile PF01663: Type I phosphodiesterase /
nucleotide pyrophosphatase
Length = 461
Score = 29.5 bits (63), Expect = 1.7
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = -1
Query: 186 PINMLLVSLATCPEPICPQWNCLAPITLRIGRDLS 82
P + +L S TCPE CP +N P+ R+ LS
Sbjct: 166 PGSEVLKSSWTCPEGYCPHFNLSVPLEERVDSVLS 200
>At4g08480.1 68417.m01399 mitogen-activated protein kinase, putative
similar to mitogen-activated protein kinase [Arabidopsis
thaliana] gi|1255448|dbj|BAA09057; contains Pfam
PF00069: Protein kinase domain
Length = 773
Score = 29.5 bits (63), Expect = 1.7
Identities = 18/77 (23%), Positives = 34/77 (44%)
Frame = +3
Query: 186 ASPEWLQLSA*TWALKWDSNRSSLDVLNNSSARSWSTEVYCPVPGLVPTAPSSRNYDGGF 365
+ PE +S+ W + + RSS DV+N + + P G+V ++ + + G
Sbjct: 179 SGPEDFAISSDAWKARMEHERSSSDVVNKLKSLDLDSREAGPSGGVVASSSMNHKFQGHD 238
Query: 366 KNELMVKDLELASGMAL 416
+E + +AS L
Sbjct: 239 LSEAGSIGVVVASNFTL 255
>At4g23390.1 68417.m03372 expressed protein contains Pfam profile
PF03080: Arabidopsis proteins of unknown function
Length = 401
Score = 28.7 bits (61), Expect = 2.9
Identities = 16/56 (28%), Positives = 25/56 (44%)
Frame = +3
Query: 267 NNSSARSWSTEVYCPVPGLVPTAPSSRNYDGGFKNELMVKDLELASGMALGIRSPI 434
+ +SA W EVY V P+ S GFK V L++ + + + SP+
Sbjct: 306 DGASAVFWGGEVYSSVKEKSPSMGSGHFPQEGFKKAAYVNGLKIITDITKEVSSPL 361
>At3g58620.1 68416.m06533 tetratricopeptide repeat (TPR)-containing
protein contains Pfam profile PF00515 TPR Domain
Length = 682
Score = 28.3 bits (60), Expect = 3.8
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
Frame = +3
Query: 267 NNSSARSWSTEVYCPVPGLVPT---APSSRNYDGGFKNELMVKDLELASGMA 413
NN+S+R + P PG++PT PS R G V+ L +G A
Sbjct: 133 NNNSSRGGGSGATSPNPGVLPTGNICPSGRILKTGMATRASVRPETLCTGTA 184
>At1g69420.2 68414.m07975 zinc finger (DHHC type) family protein
contains Pfam profile: PF01529: DHHC zinc finger domain
Length = 596
Score = 27.9 bits (59), Expect = 5.1
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = +1
Query: 424 VRRSHWALSQLSSTASCSPGATARKTSRCL-PATERRKQKLELKLSESF 567
V+ S W L++L++ A ARK S+ + P R + L+ S SF
Sbjct: 382 VKISPWTLARLNAEEVSKAAAEARKKSKIIQPVARRENPFVGLEASSSF 430
>At1g69420.1 68414.m07974 zinc finger (DHHC type) family protein
contains Pfam profile: PF01529: DHHC zinc finger domain
Length = 596
Score = 27.9 bits (59), Expect = 5.1
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = +1
Query: 424 VRRSHWALSQLSSTASCSPGATARKTSRCL-PATERRKQKLELKLSESF 567
V+ S W L++L++ A ARK S+ + P R + L+ S SF
Sbjct: 382 VKISPWTLARLNAEEVSKAAAEARKKSKIIQPVARRENPFVGLEASSSF 430
>At4g23360.1 68417.m03369 expressed protein predicted proteins,
Arabidopsis thaliana contains Pfam profile PF03080:
Arabidopsis proteins of unknown function; expression
supported by MPSS
Length = 873
Score = 27.5 bits (58), Expect = 6.7
Identities = 15/47 (31%), Positives = 20/47 (42%)
Frame = +3
Query: 267 NNSSARSWSTEVYCPVPGLVPTAPSSRNYDGGFKNELMVKDLELASG 407
N +S SW +VY PV P S GF+ V L++ G
Sbjct: 309 NAASYASWGGQVYSPVTKKSPPMGSGHWPSEGFQKSAYVSHLQMILG 355
>At4g04370.1 68417.m00624 pentatricopeptide (PPR) repeat-containing
protein contains INTERPRO:IPR002885 PPR repeats
Length = 729
Score = 27.5 bits (58), Expect = 6.7
Identities = 16/40 (40%), Positives = 24/40 (60%)
Frame = -3
Query: 271 LFSTSKELRFESHFNAHVHALSCSHSGDAHQHVIGQFSHL 152
+ TS L +FN+H++ LS SH GD H+ V+ FS +
Sbjct: 1 MIRTSSVLNSTKYFNSHINHLS-SH-GD-HKQVLSTFSSM 37
>At3g61680.1 68416.m06912 lipase class 3 family protein contains
Pfam profile PF01764: Lipase
Length = 649
Score = 27.5 bits (58), Expect = 6.7
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = -3
Query: 106 FEDRKGPFEVFFTTSGHEGQGSVLSTHDSSRY 11
F +R P E + + +GSVL HDS Y
Sbjct: 567 FLNRPHPLETLSQRAAYGSEGSVLRDHDSKNY 598
>At2g27700.1 68415.m03356 eukaryotic translation initiation factor 2
family protein / eIF-2 family protein similar to
SP|P39730 Translation initiation factor IF-2
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00009: Elongation factor Tu GTP binding domain,
PF03144: Elongation factor Tu domain 2
Length = 479
Score = 27.5 bits (58), Expect = 6.7
Identities = 13/45 (28%), Positives = 24/45 (53%)
Frame = +3
Query: 375 LMVKDLELASGMALGIRSPIPLGAVATQLYRIVQSRGYGQKDFSL 509
++ K +EL S L + P+ + + Y ++SRG G DF++
Sbjct: 82 ILEKTMELKSDTKLKVPRPLFIDTPGYEFYTNLRSRGLGLCDFAI 126
>At5g11700.1 68418.m01367 glycine-rich protein predicted protein,
Arabidopsis thaliana
Length = 1411
Score = 27.1 bits (57), Expect = 8.9
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +3
Query: 303 YCPVPGLVPTAPSSRNYDGGFKNELMVKDLELASGMA 413
+CP+PG S N+ G ++ ++ LEL +G A
Sbjct: 114 HCPIPGCSIAINVSGNFSLGAESTIVAGTLELTAGNA 150
>At2g31740.1 68415.m03876 expressed protein
Length = 760
Score = 27.1 bits (57), Expect = 8.9
Identities = 15/50 (30%), Positives = 22/50 (44%)
Frame = +3
Query: 222 WALKWDSNRSSLDVLNNSSARSWSTEVYCPVPGLVPTAPSSRNYDGGFKN 371
W +W SL L S+ S S + VPG + + YD GF++
Sbjct: 44 WYAEWPQLHDSLLPLLQDSSSSSSDSLQILVPGCGNSRLTEHLYDAGFRD 93
>At1g47730.1 68414.m05306 F-box family protein contains Pfam
PF00646: F-box domain; contains TIGRFAM TIGR01640 :
F-box protein interaction domain; identical to
hypothetical protein GB:AAD46016 GI:5668790 from
(Arabidopsis thaliana)
Length = 391
Score = 27.1 bits (57), Expect = 8.9
Identities = 13/41 (31%), Positives = 17/41 (41%)
Frame = +3
Query: 237 DSNRSSLDVLNNSSARSWSTEVYCPVPGLVPTAPSSRNYDG 359
+ N S+ VL N R WS Y P+ P + N G
Sbjct: 281 EKNSRSMWVLENVEQREWSCHTYLPISHYEPGLENYFNLTG 321
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,500,033
Number of Sequences: 28952
Number of extensions: 299000
Number of successful extensions: 941
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 905
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 937
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1112061928
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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