Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0307
         (646 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    22   3.8  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    22   3.8  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    22   3.8  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    22   3.8  
AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.        22   5.0  
AM292360-1|CAL23172.2|  427|Tribolium castaneum gustatory recept...    22   5.0  
AM292331-1|CAL23143.2|  437|Tribolium castaneum gustatory recept...    22   5.0  
EF222292-1|ABN79652.1|  354|Tribolium castaneum cardioactive pep...    21   6.6  

>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 8/24 (33%), Positives = 17/24 (70%)
 Frame = +3

Query: 552 IWLFISM*NCIL*VL*IYFVLNIK 623
           I++F+S+  C+L  + + F+L +K
Sbjct: 298 IYMFVSVWKCLLFFVSVLFILLVK 321


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 8/24 (33%), Positives = 17/24 (70%)
 Frame = +3

Query: 552 IWLFISM*NCIL*VL*IYFVLNIK 623
           I++F+S+  C+L  + + F+L +K
Sbjct: 298 IYMFVSVWKCLLFFVSVLFILLVK 321


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 8/24 (33%), Positives = 17/24 (70%)
 Frame = +3

Query: 552 IWLFISM*NCIL*VL*IYFVLNIK 623
           I++F+S+  C+L  + + F+L +K
Sbjct: 298 IYMFVSVWKCLLFFVSVLFILLVK 321


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 8/24 (33%), Positives = 17/24 (70%)
 Frame = +3

Query: 552 IWLFISM*NCIL*VL*IYFVLNIK 623
           I++F+S+  C+L  + + F+L +K
Sbjct: 298 IYMFVSVWKCLLFFVSVLFILLVK 321


>AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.
          Length = 556

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 9/28 (32%), Positives = 13/28 (46%)
 Frame = +3

Query: 81  YTAPTRKKSMMFQCRLSPGPSFRSWTRP 164
           Y  PT  ++ +FQ  L P     +W  P
Sbjct: 417 YVTPTPPEAPLFQNVLPPIGGMMNWNMP 444


>AM292360-1|CAL23172.2|  427|Tribolium castaneum gustatory receptor
           candidate 39 protein.
          Length = 427

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +1

Query: 463 KLIKSTVSDLKTYL 504
           KLI STV+ + TYL
Sbjct: 389 KLISSTVTSIATYL 402


>AM292331-1|CAL23143.2|  437|Tribolium castaneum gustatory receptor
           candidate 10 protein.
          Length = 437

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +1

Query: 463 KLIKSTVSDLKTYL 504
           KLI STV+ + TYL
Sbjct: 389 KLISSTVTSIATYL 402


>EF222292-1|ABN79652.1|  354|Tribolium castaneum cardioactive
           peptide receptor 2 protein.
          Length = 354

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = -2

Query: 144 MKGLVITDIGTSWTSS 97
           M G  I D+G SW  S
Sbjct: 1   MSGAPIPDVGQSWLKS 16


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 162,852
Number of Sequences: 336
Number of extensions: 3728
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16552695
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)