Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0307
         (646 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC106.02c |srx1||sulfiredoxin|Schizosaccharomyces pombe|chr 2|...    59   6e-10
SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomy...    27   2.3  
SPAC823.15 |ppa1||minor serine/threonine protein phosphatase Ppa...    27   3.1  
SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase Ogm4|Schizo...    25   7.1  
SPAC11H11.03c |||SMR and DUF1771 domain protein|Schizosaccharomy...    25   7.1  
SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces...    25   7.1  
SPAC631.02 |||bromodomain protein|Schizosaccharomyces pombe|chr ...    25   9.3  

>SPBC106.02c |srx1||sulfiredoxin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 124

 Score = 58.8 bits (136), Expect = 6e-10
 Identities = 25/60 (41%), Positives = 37/60 (61%)
 Frame = +1

Query: 334 AGNVPPIDILWIKGSQGGDYYYSFGGCHRFAAYKRLNRPTIPAKLIKSTVSDLKTYLGTA 513
           AG +PP+D+L  K S G  YY++FGGCHR  A+    R  +  KL+  + + L+ YLG +
Sbjct: 58  AGELPPVDVLTFKKS-GKPYYFAFGGCHRLRAHDEAGRKKVRCKLVNCSPNTLRLYLGAS 116



 Score = 38.3 bits (85), Expect = 0.001
 Identities = 17/40 (42%), Positives = 25/40 (62%)
 Frame = +2

Query: 71  MTSVHSAYKEEVHDVPMSVITRPFIPELDEAKVESLMETI 190
           MTS+H+     + ++ MS + RP  P LD  KV S+MET+
Sbjct: 1   MTSIHTGSNNNIVELDMSELIRPIPPVLDMNKVNSMMETM 40


>SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 786

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 23/79 (29%), Positives = 36/79 (45%), Gaps = 5/79 (6%)
 Frame = +3

Query: 306 FCSHN*ARASRQRPANRHTLDQRLSRW-----RLLLQFRRMPQIRSL*TFESSHDSRQTD 470
           F  HN    +   P     LDQ + ++     R L+ FR  P +R L   + +   R+ D
Sbjct: 382 FVDHNTKTTTWDDPRLPSALDQDVPQYKCDFRRKLIYFRSQPGMRPL-PGQCNVKVRR-D 439

Query: 471 QIYSFRFKDLSRYSTPDLK 527
            I+   + ++ RYS  DLK
Sbjct: 440 HIFEDSYAEIMRYSAHDLK 458


>SPAC823.15 |ppa1||minor serine/threonine protein phosphatase
           Ppa1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 309

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
 Frame = +3

Query: 390 LLLQFR-RMPQIRSL*TFESSHDSRQTDQIYSFRFKDLSRYSTPDL 524
           LL+ F+ R PQ  ++     +H+SRQ  Q+Y F  + L +Y   ++
Sbjct: 99  LLIAFKIRYPQRITI--LRGNHESRQITQVYGFYDECLRKYGNANV 142


>SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase
           Ogm4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 778

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 12/21 (57%), Positives = 12/21 (57%), Gaps = 1/21 (4%)
 Frame = +3

Query: 141 SFRSWTRPKWNLSWK-QYSKQ 200
           S   WTR KW  SW  QY KQ
Sbjct: 757 SVDEWTRRKWLDSWVFQYQKQ 777


>SPAC11H11.03c |||SMR and DUF1771 domain protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 206

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 17/56 (30%), Positives = 24/56 (42%)
 Frame = +1

Query: 73  DKCTQRLQGRSP*CSNVGYHQALHSGAGRGQSGISHGNNTVSNVVTALNPRSHKYD 240
           D+  Q +Q R   C   G +  LH   GRG    +H       +V  L  +S KY+
Sbjct: 83  DEAVQAVQQRIENCIRRGDNH-LHIIVGRGNHSANHVEKLRPAIVRMLEQQSIKYN 137


>SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1155

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +3

Query: 210 SAKSTFTQIRRWECLKNHSTIDH 278
           S K +FT I RW    ++ TI+H
Sbjct: 144 SDKPSFTSIYRWNVTNSNVTIEH 166


>SPAC631.02 |||bromodomain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 727

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +1

Query: 166 SGISHGNNTVSNVVTALNPRSHKYDDGNA 252
           SGI+   NTV+  + A N +S   DD ++
Sbjct: 686 SGIAQNKNTVTGNIAAYNTKSLGSDDSSS 714


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,801,198
Number of Sequences: 5004
Number of extensions: 59261
Number of successful extensions: 151
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)