Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0307
         (646 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0519 + 3758919-3759090,3759673-3759833,3760633-3760666,376...    42   6e-04
12_01_0119 + 905916-907277,907737-907774,908269-908492,909411-90...    32   0.45 
08_02_0270 + 15108178-15108587,15108678-15108774,15109445-151094...    28   7.3  
12_02_1240 + 27280583-27281101,27281500-27282138                       27   9.7  
07_01_0364 + 2710650-2711228                                           27   9.7  
01_05_0736 - 24760576-24760690,24760885-24761108,24761188-247612...    27   9.7  

>06_01_0519 +
           3758919-3759090,3759673-3759833,3760633-3760666,
           3760767-3760860,3761305-3761308
          Length = 154

 Score = 41.5 bits (93), Expect = 6e-04
 Identities = 20/48 (41%), Positives = 28/48 (58%)
 Frame = +1

Query: 352 IDILWIKGSQGGDYYYSFGGCHRFAAYKRLNRPTIPAKLIKSTVSDLK 495
           ID+L + G      YY F GCHR+ A++RL  PTI  K+ + T   L+
Sbjct: 112 IDVLEVDG-----VYYGFSGCHRYEAHQRLGLPTIRCKVRRGTKETLR 154


>12_01_0119 +
           905916-907277,907737-907774,908269-908492,909411-909637,
           909733-909980,910275-910557,910707-911135
          Length = 936

 Score = 31.9 bits (69), Expect = 0.45
 Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 6/55 (10%)
 Frame = -2

Query: 489 IGNCRFDQFGGNRGTIQTFIGC------ESVASAETVVVIATLRAFDPKYVYWRD 343
           +GNC+   FGG+  T  T I C       S A   T+V+  TLR + P  V  ++
Sbjct: 761 VGNCKTIYFGGHESTAVTAIWCLMLLATHSEAMEVTMVIQETLRLYPPASVMMQE 815


>08_02_0270 +
           15108178-15108587,15108678-15108774,15109445-15109492,
           15109583-15109806,15111367-15111463,15111556-15111651,
           15112297-15112544,15112632-15112715,15112787-15113236,
           15114880-15115024,15115116-15115217,15115677-15115769,
           15117308-15117349,15119085-15119113,15119210-15119251,
           15119922-15119997,15120764-15120835,15121208-15121326,
           15121428-15121491,15121576-15123009
          Length = 1323

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +3

Query: 117 QCRLSPGPSFRSWTRPKWNLSWKQYSKQRCHSAKSTFT 230
           Q   SP P +  W+RP W    K+ ++Q  H+  + F+
Sbjct: 863 QWNKSPPPLYL-WSRPDWTQKHKRIAEQHGHTKANVFS 899


>12_02_1240 + 27280583-27281101,27281500-27282138
          Length = 385

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = +1

Query: 316 IIKQELAGNVPPIDILWIKGSQGGDYYYSFGGCHRFAAYKR 438
           ++  E AG +    + W+  S+GG +  +FGG     A+ R
Sbjct: 302 VLSIEAAGRIANRSVTWVDWSRGGAHPATFGGADVGEAWVR 342


>07_01_0364 + 2710650-2711228
          Length = 192

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -3

Query: 386 PP*EPLIQSMSIGGTLPASSCLIMATKVNSTVVP 285
           PP +P +  + +GG L      +MA  +N T+VP
Sbjct: 149 PPGQPPVPVVFVGGRLLGGVEKVMACHINGTLVP 182


>01_05_0736 -
           24760576-24760690,24760885-24761108,24761188-24761248,
           24761909-24763992
          Length = 827

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 22/84 (26%), Positives = 35/84 (41%), Gaps = 2/84 (2%)
 Frame = +3

Query: 183 KQYSKQRCHSAKSTFTQIRRWE-CLKNHSTIDHNPGYNCGIDFCSHN*ARASRQRPANRH 359
           ++YS+Q   S +    Q R+W+ C   H   ++NP Y C    C H      R  P   H
Sbjct: 115 ERYSRQS--SGRYRQYQGRQWDGCGVGHG--NYNPSYTCSCPHCLH----GQRTAPQEEH 166

Query: 360 -TLDQRLSRWRLLLQFRRMPQIRS 428
             + +  +      +F R P + S
Sbjct: 167 IPMARYFAGQHECYRFERSPSVSS 190


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,965,513
Number of Sequences: 37544
Number of extensions: 386992
Number of successful extensions: 801
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 789
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 801
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1596695220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)