Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0307
         (646 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_23388| Best HMM Match : ParBc (HMM E-Value=0.3)                     88   5e-18
SB_38996| Best HMM Match : Pepsin-I3 (HMM E-Value=1.7)                 31   0.61 
SB_53863| Best HMM Match : Keratin_B2 (HMM E-Value=0.67)               31   1.1  
SB_54780| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.4  
SB_52815| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.3  
SB_44841| Best HMM Match : 7tm_1 (HMM E-Value=4.79999e-40)             28   7.5  
SB_8843| Best HMM Match : SpdB (HMM E-Value=4)                         28   7.5  
SB_20965| Best HMM Match : Fz (HMM E-Value=3.1)                        27   9.9  

>SB_23388| Best HMM Match : ParBc (HMM E-Value=0.3)
          Length = 1168

 Score = 88.2 bits (209), Expect = 5e-18
 Identities = 38/57 (66%), Positives = 46/57 (80%)
 Frame = +1

Query: 343  VPPIDILWIKGSQGGDYYYSFGGCHRFAAYKRLNRPTIPAKLIKSTVSDLKTYLGTA 513
            VPPID+LWIKG QGG+Y+YSFGG HR  A+KRL+R TIP KLI  TV  LK +LG++
Sbjct: 1106 VPPIDVLWIKGRQGGNYFYSFGGAHRLEAHKRLSRNTIPCKLIPGTVEILKMHLGSS 1162



 Score = 47.2 bits (107), Expect = 1e-05
 Identities = 21/38 (55%), Positives = 28/38 (73%)
 Frame = +2

Query: 77   SVHSAYKEEVHDVPMSVITRPFIPELDEAKVESLMETI 190
            SVHSA   E H VP++ ITRPF+ +LDE KV+SL+  +
Sbjct: 1060 SVHSAGITETHAVPINAITRPFVADLDERKVQSLVTVL 1097


>SB_38996| Best HMM Match : Pepsin-I3 (HMM E-Value=1.7)
          Length = 865

 Score = 31.5 bits (68), Expect = 0.61
 Identities = 20/69 (28%), Positives = 31/69 (44%)
 Frame = +3

Query: 174 LSWKQYSKQRCHSAKSTFTQIRRWECLKNHSTIDHNPGYNCGIDFCSHN*ARASRQRPAN 353
           L W+  S++R   AK  FT       LK ++   +NP   CG+  C    + A R++  +
Sbjct: 775 LDWQAQSRERGALAKQNFTDTDY--ALKLYNQTQNNPWSRCGLLSCPTTTSPAKRRKTPS 832

Query: 354 RHTLDQRLS 380
             T    LS
Sbjct: 833 CRTFAPALS 841


>SB_53863| Best HMM Match : Keratin_B2 (HMM E-Value=0.67)
          Length = 441

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 22/69 (31%), Positives = 30/69 (43%)
 Frame = +3

Query: 174 LSWKQYSKQRCHSAKSTFTQIRRWECLKNHSTIDHNPGYNCGIDFCSHN*ARASRQRPAN 353
           L W+  S++R   AK  FT       L N  T   NP   CG+  C    + A R++  +
Sbjct: 370 LDWQAQSRERGSLAKQNFTDTDYALKLYNQ-TRPSNPWSRCGLLSCPTTTSPAQRRKTPS 428

Query: 354 RHTLDQRLS 380
             TL   LS
Sbjct: 429 WRTLAPALS 437


>SB_54780| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 275

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 16/38 (42%), Positives = 26/38 (68%), Gaps = 1/38 (2%)
 Frame = -3

Query: 371 LIQSMSIGGTLPASSCLIMATKVNSTVVPWIVV-YR*M 261
           ++ S+ IG T+ A +CL++   V +T+V W+VV YR M
Sbjct: 1   MLTSLEIGLTV-AFTCLVITDLVGNTLVIWVVVRYRMM 37


>SB_52815| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 540

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
 Frame = +1

Query: 64  LEDDKCTQRLQGRSP*CSNVGYHQA--LHSGAGRGQSGISHGNNTVSNVVTALNPRSHKY 237
           +EDD+ + R +GR    +N G +++     G GRG+ G + G         A NPRS+  
Sbjct: 34  MEDDRQSNRGRGRGGYNNNQGSYRSRGRGRGRGRGRGGNNRGRGGRGGRQDA-NPRSYLA 92

Query: 238 DD 243
           D+
Sbjct: 93  DE 94


>SB_44841| Best HMM Match : 7tm_1 (HMM E-Value=4.79999e-40)
          Length = 1198

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 14/55 (25%), Positives = 25/55 (45%)
 Frame = +1

Query: 352  IDILWIKGSQGGDYYYSFGGCHRFAAYKRLNRPTIPAKLIKSTVSDLKTYLGTAH 516
            ID  + KG+   DYYY +   +    YK+ ++    A  ++  +      +GT H
Sbjct: 973  IDFYYCKGNARIDYYYGYKLANILGRYKKPSKENSIATKLRFDLPSAYHAIGTLH 1027


>SB_8843| Best HMM Match : SpdB (HMM E-Value=4)
          Length = 825

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 16/58 (27%), Positives = 26/58 (44%)
 Frame = +3

Query: 189 YSKQRCHSAKSTFTQIRRWECLKNHSTIDHNPGYNCGIDFCSHN*ARASRQRPANRHT 362
           Y K R     +T    R++     H+TI+ N  Y       + N   +SR+  +NR+T
Sbjct: 657 YRKYRTIIVHTTINDYRKYRTTIGHTTINDNRKYRTITGHTTINFINSSREGWSNRYT 714


>SB_20965| Best HMM Match : Fz (HMM E-Value=3.1)
          Length = 529

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = -2

Query: 372 FDPKYVYWRDVAC*LLLNYGYKSQFHSCTLDC 277
           FD +YV+ RDV C +L+ YG ++   S   +C
Sbjct: 252 FD-EYVHRRDVRCYVLVPYGSRNHAMSVVTEC 282


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,762,316
Number of Sequences: 59808
Number of extensions: 449950
Number of successful extensions: 1123
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1033
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1123
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1633044375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)