Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0307
         (646 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81561-1|CAB04552.2|  550|Caenorhabditis elegans Hypothetical pr...    29   2.1  
U59211-1|AAB09670.1|  420|Caenorhabditis elegans embryonic membr...    27   8.6  
U53343-3|AAA96220.2|  420|Caenorhabditis elegans Innexin protein...    27   8.6  

>Z81561-1|CAB04552.2|  550|Caenorhabditis elegans Hypothetical
           protein K03D10.3 protein.
          Length = 550

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 3/63 (4%)
 Frame = -1

Query: 307 KSIPQLYPGLWSIVE*FFKHSHRRICVNVDLAL*QRCLLYC-FHERF--HFGLVQLRNEG 137
           K+IPQ+  G   I+  ++       C N+D+ + + CLLY   HERF  H    ++R + 
Sbjct: 187 KNIPQITIGAHEILAWYYS-PFPPDCENLDIYMCEYCLLYTPHHERFKQHIDTCKVR-QP 244

Query: 136 PGD 128
           PG+
Sbjct: 245 PGN 247


>U59211-1|AAB09670.1|  420|Caenorhabditis elegans embryonic membrane
           protein protein.
          Length = 420

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 10/41 (24%), Positives = 20/41 (48%)
 Frame = +3

Query: 105 SMMFQCRLSPGPSFRSWTRPKWNLSWKQYSKQRCHSAKSTF 227
           S+M  C+   G + + W   ++   W+QY++  C    + F
Sbjct: 40  SIMVSCKQYVGSAIQCWMPMEFKGGWEQYAEDYCFIQNTFF 80


>U53343-3|AAA96220.2|  420|Caenorhabditis elegans Innexin protein 3
           protein.
          Length = 420

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 10/41 (24%), Positives = 20/41 (48%)
 Frame = +3

Query: 105 SMMFQCRLSPGPSFRSWTRPKWNLSWKQYSKQRCHSAKSTF 227
           S+M  C+   G + + W   ++   W+QY++  C    + F
Sbjct: 40  SIMVSCKQYVGSAIQCWMPMEFKGGWEQYAEDYCFIQNTFF 80


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,472,966
Number of Sequences: 27780
Number of extensions: 337216
Number of successful extensions: 856
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 816
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 856
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1423653030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)