Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0307
         (646 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g31170.1 68414.m03815 parB-like nuclease domain-containing pr...    46   2e-05
At2g31820.1 68415.m03886 ankyrin repeat family protein contains ...    29   3.5  
At3g27500.1 68416.m03438 DC1 domain-containing protein contains ...    28   6.1  
At4g11560.1 68417.m01853 bromo-adjacent homology (BAH) domain-co...    27   8.1  
At2g29220.1 68415.m03551 lectin protein kinase, putative similar...    27   8.1  

>At1g31170.1 68414.m03815 parB-like nuclease domain-containing
           protein contains Pfam profile PF02195: ParB-like
           nuclease domain
          Length = 125

 Score = 46.4 bits (105), Expect = 2e-05
 Identities = 21/52 (40%), Positives = 32/52 (61%)
 Frame = +1

Query: 349 PIDILWIKGSQGGDYYYSFGGCHRFAAYKRLNRPTIPAKLIKSTVSDLKTYL 504
           PID++ + G+     YY F GCHR+ A+++L  PTI  K+ K T   L+ +L
Sbjct: 78  PIDVIEVDGT-----YYGFSGCHRYEAHQKLGLPTIRCKIRKGTKETLRHHL 124


>At2g31820.1 68415.m03886 ankyrin repeat family protein contains
           ankyrin repeat domains, Pfam:PF00023
          Length = 662

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = +1

Query: 424 AAYKRLNRPTIPAKLIKSTVSDLK 495
           A  K L +P  PAK +K TVSD+K
Sbjct: 419 ATAKDLGKPQNPAKQLKQTVSDIK 442


>At3g27500.1 68416.m03438 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 609

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = +2

Query: 80  VHSAYKEEVHDVPMSVITRPFI 145
           ++S+Y EE  D+P S IT PFI
Sbjct: 464 IYSSYLEENFDLPCSSITVPFI 485


>At4g11560.1 68417.m01853 bromo-adjacent homology (BAH)
           domain-containing protein contains Pfam profile PF01426:
           BAH domain
          Length = 587

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 21/67 (31%), Positives = 27/67 (40%)
 Frame = -2

Query: 213 RCDNVAYCIVSMRDSTLASSSSGMKGLVITDIGTSWTSSL*ALCTLVIFEDLAAVAEVKL 34
           RC   +   V +RD   A      + L   D G SW +S   + TL I  D  A    K 
Sbjct: 491 RCSRCSQLTVGLRDIIQAGHGDRYQ-LECVDCGYSWYASRDEVSTLTIVTDKPAQGTEKE 549

Query: 33  AIFFNIT 13
            I  N+T
Sbjct: 550 DIEKNLT 556


>At2g29220.1 68415.m03551 lectin protein kinase, putative similar to
           receptor lectin kinase 3 [Arabidopsis thaliana]
           gi|4100060|gb|AAD00733; contains protein kinase domain,
           Pfam:PF00069; contains legume lectins alpha and beta
           domains, Pfam:PF00138 and Pfam:PF00139
          Length = 627

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 18/48 (37%), Positives = 21/48 (43%), Gaps = 2/48 (4%)
 Frame = +1

Query: 112 CSNVGYHQALHSGAGRGQSGISHGNNTVSNVV--TALNPRSHKYDDGN 249
           C   G   AL    G GQ  + HGN   SNV+    LN R   Y  G+
Sbjct: 453 CIIKGIAAALQHLHGEGQKPLIHGNVKASNVLLDEELNARLGDYGQGS 500


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,584,103
Number of Sequences: 28952
Number of extensions: 313663
Number of successful extensions: 732
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 722
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 732
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1334473344
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)